PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g11035.1.p
Common NameBRADI_3g11035
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 677aa    MW: 75926.9 Da    PI: 5.1092
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g11035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81.1e-07515557145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       r +W++ + +l++++ +q+G++ ++ I + ++  +t+ q++ ++ 
  Bradi3g11035.1.p 515 RAKWSKSDTDLFYQGLQQYGSD-FAMIQQLFP-DKTRDQVRQKFK 557
                       569*******************.*********.*********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.48E-10507558IPR009057Homeodomain-like
PfamPF159635.4E-24508587No hitNo description
PROSITE profilePS512939.916513561IPR017884SANT domain
SMARTSM007172.8E-8514562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-4515558IPR009057Homeodomain-like
CDDcd001673.75E-6517558No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
DFGNITDDLE EVKTAAKFHL KAQAKSRKAS FPSRSLSPNP CVEKTADKMI GDAAASEGIL  60
STPSGDVLTD SAVGRVSQNE DHGHDPSEVA TYQGNLLVSD TQASSSRFGV KTIDDLVDFE  120
GMFDTNVEQE IVAKFKPKTQ VKLGKVASKS RKMDQKAVAS TIDVASQSKD NNRAPRHQEY  180
IQTSDYQPSM EINNIAVDKA NHESILEEPA QEEADIDANI DLESQENLIN PQIDDTGQII  240
GEPSATAEFQ PNIGRKKGKG KSVTFILRDA SKGVAPADTG SERSNTITEY TDRENQYHEG  300
ESSDQAVKKQ PGLDVGKLEL SMKLRSRKKV VKVGISEDAT DNNFDDYLEA LAVEQVNDSD  360
QEYSAGAKQK IRRKSRDSTI EESQQQNLQK EKSEVTSRGR KRASKDTEEP EKKLTRRIRQ  420
NITKEVKTLL EKPDHETDRM KLSVMHLRLL QQARERIESK TIPSGPSASN QRSQFGDLDD  480
FDPFGENCHY GRTESYMLEN ATKLNYHSYM NKQTRAKWSK SDTDLFYQGL QQYGSDFAMI  540
QQLFPDKTRD QVRQKFKTEE NKHPMQVHDA VLYRSRDNLY LKQVIKQLNI EDLPRDIDTT  600
HKQECASNEG NPGNENVLDG FMNEEENGSN WSDTEQGTHG LEIKEGESVS ANVEDALMFS  660
IGTSTTIVIK IRKYWS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g11035.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227475.10.0uncharacterized protein LOC104581510 isoform X3
TrEMBLA0A2K2CWJ20.0A0A2K2CWJ2_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI1G35190.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25952946
Representative plantOGRP1010535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-34MYB_related family protein