PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g10450.1.p
Common NameBRADI_3g10450, LOC100824807
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 792aa    MW: 91069 Da    PI: 7.5641
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g10450.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.14.4e-21183264291
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                       fYn+YA  +GF+ ++ +++++      +k +  C+++gk++++++  +k+r+t+++++t+C+ak+ vk++ +g+we t++++eHnH+l+p
  Bradi3g10450.1.p 183 FYNTYALLTGFTAKRGSNYRR------KKFHIECNRSGKSTPTQDV-NKKRKTNSVEKTNCQAKVIVKLT-KGQWEFTTVRNEHNHPLCP 264
                       9******************99......45779**********9988.9**********************.9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.6E-19183264IPR004330FAR1 DNA binding domain
PfamPF105513.9E-26386477IPR018289MULE transposase domain
PROSITE profilePS509669.124668704IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 792 aa     Download sequence    Send to blast
MTEMDTELDK AGAEIAGNSK RMRGTYIVAG DEGSHVPKLH RKKASKNMKT TTSASELSKG  60
SVAGQSIIEG RLQPAGDNYQ ELSSDSIEKN TEGLLADELD KQTNSVDHSL QQAGEQNHLH  120
DNVESNEMLR NNTSNESDSD SSSGSDSESE LGKYFYPKFE QLETARKPES GMKFQTLEDA  180
HGFYNTYALL TGFTAKRGSN YRRKKFHIEC NRSGKSTPTQ DVNKKRKTNS VEKTNCQAKV  240
IVKLTKGQWE FTTVRNEHNH PLCPNPSLTN FFLSHKHMQN EEKLFLKVLQ QSRIPPNKVM  300
KIFRRMRSSF GNITFKNKDV TDLQYTEQKR SENSDVESAL KHLKELELQN PWFFYAKQTD  360
EDNIVQSIFW TDVRSRMDYE IFGDFLSFDT TYTTSRNNMI FVPVVGINNQ GRTLLFGCAL  420
LHDGKAETFK WMFQTLLQVM GEKLPGSLIT NHDEAMAKAI AEVMPQVRHR FCKWDVMGKA  480
QEKIAALMAA RGNMKAELDR LVDNSLTESE FEEGWGALLN RYDANRNDYL QLMWQSRKNW  540
VPVYFRQDFY PFVESLGRGE VMNLLFKDYV LPKDRIEKFI DSYVEIQKKI TKTDDEDRLQ  600
RGTAPSCFSL QPIEKHGAII YTRQIFLKVQ RELLHSTAFN VQEVQRGAVY RLVKVFNYEN  660
PEFDRDYFEV LVELGSNTFK CQCAKFTRDG ILCCHIFRLF TQFGINEIPG QYIVPRWTDK  720
FKEEMTKQCQ GKTLEHVNNT TRYAMLMSKM ADLGKKICGD GAKCNTFMLE FDKIQEKLVS  780
TEGENLLNND S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g10450.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755491.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_024316215.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A0Q3HM000.0A0A0Q3HM00_BRADI; Uncharacterized protein
STRINGBRADI3G10450.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1203336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-89FAR1-related sequence 5