PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g10437.3.p

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 943aa MW: 108249 Da PI: 6.8641

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g10437.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.8	5.8e-21	295	375	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA +GF v++ +++ + +k ++vC+++gk+++++ + ++r++++ ++t+C+ak+ vk++ +g+we t++++eHnH+l+p Bradi3g10437.3.p 295 FYNTYALLTGFAVKRGTNYMR------KKFHLVCNRSGKPKPTRLN--RKRKRSSIEKTNCQAKVIVKLT-RGQWEFTTVRNEHNHPLCP 375 9**************9998......4678*******9988..99999*************.9**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-18	295	375	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.3E-28	493	581	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.112	775	811	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0018	786	813	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 943 aa Download sequence Send to blast
MPPRLPLLAA SATTPSLRRS SSSSRERRHR RLVSPSILSL PTVSPPHTLR TDAPFSSPFH 60 LNLPQFVTEA KVKVGRPPYL ALLGPPPVVA LIQFAMTEMM TELDMAEADI TEKSSKLTGT 120 CIVAGDEGFR NPESRRKKEP DGNQSMTEAR VRPADANSQE LSSGSIEKNI EEPVANQSVT 180 EARVQPASDN SQELSSDSIE KNTEGLLEDE LDIQTNSVEH TPQQAEEQNQ LHGNMQIIEM 240 PSNNISSESD SDSSSGSDSD SELGKYFYPK IEELENARQP EPGMKFQTLE DAHGFYNTYA 300 LLTGFAVKRG TNYMRKKFHL VCNRSGKPKP TRLNRKRKRS SIEKTNCQAK VIVKLTRGQW 360 EFTTVRNEHN HPLCPSASLT KFFLSHKDIS TEEKSLLKVL QKSRIPPNKV MKIFRRMRDI 420 PLKKKDMTGL QYAEHRRTEN SDVEVTLKHL KELELRNPCF LYTKQTDEDN IARSIFWSDA 480 RSKLDYEIFG DFLLFDTTYT TFRHNMPFTP IIGINNHGRT LLLGCALLHD EKSETFIWMF 540 QKLLQMMGGK MPVSIITNQD EAMAKAIAEV MPQVRHRFCK SDVMGKAQEK ISAFMAVRGN 600 IKEELDSLVD NSLTETEFEE GWISLIKRYD ASENEYLRIM WKTRKNWVPV YFRQDFFPFV 660 ESHGRGERMN LLFKDYVLTN DRIEKFIERY EEIQKEIIET DDEDRLQTGT VPSCFSLHPI 720 EKHAANIYTR QIFLKVQREV LNSTAFNVHE VQRGVVYRLD KVFNYENPEF DRNYFEVIVE 780 PGTNSFTCQC AKFTRDGILC CHIIRLFTQF GINEIPEQYI LPRWTDKFRE EKAKQYKEKC 840 LRKTENTMRY AKFMSKMADL GKRICGDGAR YNAAMLEVDK IEKMSTAEGE NPEFDELDSM 900 CCGQGPRQQK HWHDCRAAEA MSDMCGNQDV QVQVGAHVQD EG*

Sequence ? help Back to Top

Protein Sequence Length: 943 aa Download sequence Send to blast

MPPRLPLLAA SATTPSLRRS SSSSRERRHR RLVSPSILSL PTVSPPHTLR TDAPFSSPFH  60
LNLPQFVTEA KVKVGRPPYL ALLGPPPVVA LIQFAMTEMM TELDMAEADI TEKSSKLTGT  120
CIVAGDEGFR NPESRRKKEP DGNQSMTEAR VRPADANSQE LSSGSIEKNI EEPVANQSVT  180
EARVQPASDN SQELSSDSIE KNTEGLLEDE LDIQTNSVEH TPQQAEEQNQ LHGNMQIIEM  240
PSNNISSESD SDSSSGSDSD SELGKYFYPK IEELENARQP EPGMKFQTLE DAHGFYNTYA  300
LLTGFAVKRG TNYMRKKFHL VCNRSGKPKP TRLNRKRKRS SIEKTNCQAK VIVKLTRGQW  360
EFTTVRNEHN HPLCPSASLT KFFLSHKDIS TEEKSLLKVL QKSRIPPNKV MKIFRRMRDI  420
PLKKKDMTGL QYAEHRRTEN SDVEVTLKHL KELELRNPCF LYTKQTDEDN IARSIFWSDA  480
RSKLDYEIFG DFLLFDTTYT TFRHNMPFTP IIGINNHGRT LLLGCALLHD EKSETFIWMF  540
QKLLQMMGGK MPVSIITNQD EAMAKAIAEV MPQVRHRFCK SDVMGKAQEK ISAFMAVRGN  600
IKEELDSLVD NSLTETEFEE GWISLIKRYD ASENEYLRIM WKTRKNWVPV YFRQDFFPFV  660
ESHGRGERMN LLFKDYVLTN DRIEKFIERY EEIQKEIIET DDEDRLQTGT VPSCFSLHPI  720
EKHAANIYTR QIFLKVQREV LNSTAFNVHE VQRGVVYRLD KVFNYENPEF DRNYFEVIVE  780
PGTNSFTCQC AKFTRDGILC CHIIRLFTQF GINEIPEQYI LPRWTDKFRE EKAKQYKEKC  840
LRKTENTMRY AKFMSKMADL GKRICGDGAR YNAAMLEVDK IEKMSTAEGE NPEFDELDSM  900
CCGQGPRQQK HWHDCRAAEA MSDMCGNQDV QVQVGAHVQD EG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g10437.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014755403.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBL	A0A2K2CWE1	0.0	A0A2K2CWE1_BRADI; Uncharacterized protein
STRING	BRADI3G10437.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-79	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Bradi3g10437.3.p