PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g10437.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 960aa    MW: 109879 Da    PI: 6.9428
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g10437.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.75.9e-21312392291
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                       fYn+YA  +GF v++ +++ +      +k ++vC+++gk+++++ +  ++r++++ ++t+C+ak+ vk++ +g+we t++++eHnH+l+p
  Bradi3g10437.2.p 312 FYNTYALLTGFAVKRGTNYMR------KKFHLVCNRSGKPKPTRLN--RKRKRSSIEKTNCQAKVIVKLT-RGQWEFTTVRNEHNHPLCP 392
                       9****************9998......4678***********9988..99999*****************.9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-18312392IPR004330FAR1 DNA binding domain
PfamPF105518.5E-28510598IPR018289MULE transposase domain
PROSITE profilePS509669.112792828IPR007527Zinc finger, SWIM-type
SMARTSM005750.0018803830IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 960 aa     Download sequence    Send to blast
MPPRLPLLAA SATTPSLRRS SSSSRERRHR RLVSPSILSL PTVSPPHTLR TDAPFSSPFH  60
LNLPQFVTEA KVKVGRPPYL ALLGPPPVVA LIQFAMTEMM TELDMAEADI TEKSSKLTGT  120
CIVAGDEGFR NPESRRKKAI KNAGTATASV SELSKEPDGN QSMTEARVRP ADANSQELSS  180
GSIEKNIEEP VANQSVTEAR VQPASDNSQE LSSDSIEKNT EGLLEDELDI QTNSVEHTPQ  240
QAEEQNQLHG NMQIIEMPSN NISSESDSDS SSGSDSDSEL GKYFYPKIEE LENARQPEPG  300
MKFQTLEDAH GFYNTYALLT GFAVKRGTNY MRKKFHLVCN RSGKPKPTRL NRKRKRSSIE  360
KTNCQAKVIV KLTRGQWEFT TVRNEHNHPL CPSASLTKFF LSHKDISTEE KSLLKVLQKS  420
RIPPNKVMKI FRRMRDIPLK KKDMTGLQYA EHRRTENSDV EVTLKHLKEL ELRNPCFLYT  480
KQTDEDNIAR SIFWSDARSK LDYEIFGDFL LFDTTYTTFR HNMPFTPIIG INNHGRTLLL  540
GCALLHDEKS ETFIWMFQKL LQMMGGKMPV SIITNQDEAM AKAIAEVMPQ VRHRFCKSDV  600
MGKAQEKISA FMAVRGNIKE ELDSLVDNSL TETEFEEGWI SLIKRYDASE NEYLRIMWKT  660
RKNWVPVYFR QDFFPFVESH GRGERMNLLF KDYVLTNDRI EKFIERYEEI QKEIIETDDE  720
DRLQTGTVPS CFSLHPIEKH AANIYTRQIF LKVQREVLNS TAFNVHEVQR GVVYRLDKVF  780
NYENPEFDRN YFEVIVEPGT NSFTCQCAKF TRDGILCCHI IRLFTQFGIN EIPEQYILPR  840
WTDKFREEKA KQYKEKCLRK TENTMRYAKF MSKMADLGKR ICGDGARYNA AMLEVDKIEK  900
MSTAEGENPE FDELDSMCCG QGPRQQKHWH DCRAAEAMSD MCGNQDVQVQ VGAHVQDEG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g10437.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234143.20.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A2K2CWE20.0A0A2K2CWE2_BRADI; Uncharacterized protein
STRINGBRADI3G10437.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1203336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-79FAR1-related sequence 5