PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g10416.1.p
Common NameBRADI_3g10416, LOC100823886
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 721aa    MW: 83396 Da    PI: 6.4209
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g10416.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR146.11.6e-14113194291
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                       +Y+++A  +GF   + +++ +      +k ++ C+++ k +++++  +++r+  + +rt+C+ak++vk   +g+we t +++eHnH l+p
  Bradi3g10416.1.p 113 YYSTHALLTGFVAIRGQNYVR------KKFHLECNRSRKLTPSQDL-KRRREIDSINRTQCQAKVVVKPV-KGQWEFTAIQSEHNHLLCP 194
                       9***************99998......4678***********9988.999999***************99.9***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-12112194IPR004330FAR1 DNA binding domain
PfamPF105515.0E-30316408IPR018289MULE transposase domain
PROSITE profilePS509669.025598634IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MEEYINPAAY EEQSVNGTDW SSGVLPDKLE NGANSVDCSL QLAEEQNQLP DILGINEMLI  60
DDTGSGSDSD SSSGNEADKE PGKYFYPSFE ELENQRPPEV GMKFPTLEDA NRYYSTHALL  120
TGFVAIRGQN YVRKKFHLEC NRSRKLTPSQ DLKRRREIDS INRTQCQAKV VVKPVKGQWE  180
FTAIQSEHNH LLCPSPSLTR FFLNCKHMST EEKSFLRVLQ QSSIHPKKAM KIFKRMGSSL  240
GNLPFKKKGA SNSESAEQQR KPNSDVEKTL KHLKELELQN PCVSCTMQTD EDGIVRSIFW  300
TDARSRMDYE IFGDFISLDT TYSTNRHNMP FAPIIGINSH GRSLVLGCAL LQDQRAETFA  360
WMFRTFLQAM GGKLPRSIIT NQDEAIGKAI AEVMPQVRHR FCKFYVMMKA REKLRAFMAE  420
RGNINVELHS LVDNSLTETE FEEGWEALIE IYGASENEHL QILWQTRKNW VPAYFREDFY  480
PFVGATKRGE GTNLLFKDFV LPKDRIEKFL EKYEEMQEMI MKIDDEDRLQ SKTELSCFSL  540
QPIEKHAARI YTRPIFQKVQ KELLHSTAFN VQEIQRGTLY RLDKVFDYEN PEFDRISFEV  600
LVTPDTNTIK CECTKFARDG ILCCHIFRLF TQFGINEIPE QYIVPRWTGK FKEDQVVLYK  660
EKCLDTHDIN QSENTLRYAM LMTKVSDISK EICCDLSKCD KFMLELDKIR EKLPTVRRNS  720
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g10416.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571206.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLI1HZK40.0I1HZK4_BRADI; Uncharacterized protein
STRINGBRADI3G10416.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1203336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-85FAR1-related sequence 5