PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g10075.5.p

Common Name

BRADI_3g10075, LOC104583495

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

MYB

Protein Properties

Length: 300aa MW: 33034 Da PI: 7.6105

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g10075.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.5	4.1e-10	2	33	16	48
HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 v+ lG+++W+tIa m+ R+++qc++rw yl Bradi3g10075.5.p 2 VQNLGTKNWSTIACAMP-LRSRYQCRERWTYYL 33 899************.9********9886 PP
2	Myb_DNA-binding	48.6	1.8e-15	39	83	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++W+++++ l++a++++G++ W+ a+ ++ gRt+k +k++w+ + Bradi3g10075.5.p 39 RQAWSEQDEVTLIHAHEMHGNK-WRELAKLFP-GRTGKAVKNHWNGH 83 89******************.*****.*********966 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	13	1	35	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	10.176	1	33	IPR017930	Myb domain
CDD	cd00167	1.68E-6	1	33	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.0E-13	2	40	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-7	2	33	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.81E-24	13	90	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.579	34	88	IPR017930	Myb domain
SMART	SM00717	6.2E-14	38	86	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-14	39	81	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-20	41	89	IPR009057	Homeodomain-like
CDD	cd00167	6.94E-11	41	81	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MVQNLGTKNW STIACAMPLR SRYQCRERWT YYLNPALNRQ AWSEQDEVTL IHAHEMHGNK 60 WRELAKLFPG RTGKAVKNHW NGHMKRKLKS YLARGLPKQF QNLPVDPSVS NRGWSTPKGS 120 QDSFNNNQLP SDLLIWSESK RGLTETGENA SMLDGQSSDS IRSVSEGKPM SSSPKGFGAR 180 SADAQPKVDA GDGQIDRVVS KFPVVTDNDM ETVVSSSSVD LKVCVAAPSF VRSTSEEKQM 240 SYTGLSPAHS SQSRYAHLDE LSELHQSDIA DLLDMSYCES LMIIPPDSPQ SGNGGVPGM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-24	1	88	21	108	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g10075.5.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014756282.1	0.0	myb-related protein B isoform X1
TrEMBL	A0A0Q3PY29	0.0	A0A0Q3PY29_BRADI; Uncharacterized protein
TrEMBL	A0A2K2CWB5	0.0	A0A2K2CWB5_BRADI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.1	2e-34	myb domain protein 3r-4

Link Out ? help Back to Top
Phytozome	Bradi3g10075.5.p
Entrez Gene	104583495