PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g10075.3.p | ||||||||
Common Name | BRADI_3g10075, LOC104583495 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 346aa MW: 38648.5 Da PI: 9.6279 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.9e-16 | 59 | 105 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r rW++eE + l++ v+ lG+++W+tIa m+ R+++qc++rw yl Bradi3g10075.3.p 59 RRRWSEEENDVLIQMVQNLGTKNWSTIACAMP-LRSRYQCRERWTYYL 105 78******************************.9**********9886 PP | |||||||
2 | Myb_DNA-binding | 48.3 | 2.3e-15 | 111 | 155 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++W+++++ l++a++++G++ W+ a+ ++ gRt+k +k++w+ + Bradi3g10075.3.p 111 RQAWSEQDEVTLIHAHEMHGNK-WRELAKLFP-GRTGKAVKNHWNGH 155 89********************.*********.***********966 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.264 | 54 | 105 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.91E-26 | 57 | 152 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-12 | 58 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.8E-14 | 59 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-19 | 61 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.17E-11 | 61 | 105 | No hit | No description |
PROSITE profile | PS51294 | 24.579 | 106 | 160 | IPR017930 | Myb domain |
SMART | SM00717 | 6.2E-14 | 110 | 158 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-14 | 111 | 153 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.62E-10 | 113 | 153 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 113 | 161 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MRQTEDGLPM RRSTSRSSQM RGIAQERAKL QDAPSKNAKW RTVAECIHRK TGVYSFKKRR 60 RWSEEENDVL IQMVQNLGTK NWSTIACAMP LRSRYQCRER WTYYLNPALN RQAWSEQDEV 120 TLIHAHEMHG NKWRELAKLF PGRTGKAVKN HWNGHMKRKL KSYLARGLPK QFQNLPVDPS 180 VSNRGWSTPK ETGENASMLD GQSSDSIRSV SEGKPMSSSP KGFGARSADA QPKVDAGDGQ 240 IDRVVSKFPV VTDNDMETVV SSSSVDLKVC VAAPSFVRST SEEKQMSYTG LSPAHSSQSR 300 YAHLDELSEL HQSDIADLLD MSYCESLMII PPDSPQSGNG GVPGM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 62 | 162 | 10 | 110 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g10075.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024318247.1 | 0.0 | transcription factor MYB3R-1 isoform X4 | ||||
TrEMBL | A0A2K2CWB1 | 0.0 | A0A2K2CWB1_BRADI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.2 | 3e-40 | Homeodomain-like protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g10075.3.p |
Entrez Gene | 104583495 |