PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g10075.2.p | ||||||||
Common Name | BRADI_3g10075, LOC104583495 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 371aa MW: 41466.6 Da PI: 9.4762 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.6 | 2.1e-16 | 58 | 104 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r rW++eE + l++ v+ lG+++W+tIa m+ R+++qc++rw yl Bradi3g10075.2.p 58 RRRWSEEENDVLIQMVQNLGTKNWSTIACAMP-LRSRYQCRERWTYYL 104 78******************************.9**********9886 PP | |||||||
2 | Myb_DNA-binding | 48.2 | 2.5e-15 | 110 | 154 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++W+++++ l++a++++G++ W+ a+ ++ gRt+k +k++w+ + Bradi3g10075.2.p 110 RQAWSEQDEVTLIHAHEMHGNK-WRELAKLFP-GRTGKAVKNHWNGH 154 89********************.*********.***********966 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.264 | 53 | 104 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.16E-26 | 56 | 151 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-12 | 57 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.7E-14 | 58 | 104 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.54E-11 | 60 | 104 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-19 | 60 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.579 | 105 | 159 | IPR017930 | Myb domain |
SMART | SM00717 | 6.2E-14 | 109 | 157 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-14 | 110 | 152 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.34E-10 | 112 | 152 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-20 | 112 | 160 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MRQTEDGLPM RRSTSRSSQM RGIAQERAKL QDAPSKNAKW RTVECIHRKT GVYSFKKRRR 60 WSEEENDVLI QMVQNLGTKN WSTIACAMPL RSRYQCRERW TYYLNPALNR QAWSEQDEVT 120 LIHAHEMHGN KWRELAKLFP GRTGKAVKNH WNGHMKRKLK SYLARGLPKQ FQNLPVDPSV 180 SNRGWSTPKG SQDSFNNNQL PSDLLIWSES KRGLTETGEN ASMLDGQSSD SIRSVSEGKP 240 MSSSPKGFGA RSADAQPKVD AGDGQIDRVV SKFPVVTDND METVVSSSSV DLKVCVAAPS 300 FVRSTSEEKQ MSYTGLSPAH SSQSRYAHLD ELSELHQSDI ADLLDMSYCE SLMIIPPDSP 360 QSGNGGVPGM * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-27 | 61 | 161 | 10 | 110 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g10075.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014756283.1 | 0.0 | myb-like protein AA isoform X2 | ||||
TrEMBL | A0A2K2CWB2 | 0.0 | A0A2K2CWB2_BRADI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.1 | 2e-39 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g10075.2.p |
Entrez Gene | 104583495 |