PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g10075.1.p | ||||||||
Common Name | BRADI_3g10075, LOC104583495 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 372aa MW: 41537.6 Da PI: 9.4762 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.6 | 2.1e-16 | 59 | 105 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r rW++eE + l++ v+ lG+++W+tIa m+ R+++qc++rw yl Bradi3g10075.1.p 59 RRRWSEEENDVLIQMVQNLGTKNWSTIACAMP-LRSRYQCRERWTYYL 105 78******************************.9**********9886 PP | |||||||
2 | Myb_DNA-binding | 48.2 | 2.5e-15 | 111 | 155 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++W+++++ l++a++++G++ W+ a+ ++ gRt+k +k++w+ + Bradi3g10075.1.p 111 RQAWSEQDEVTLIHAHEMHGNK-WRELAKLFP-GRTGKAVKNHWNGH 155 89********************.*********.***********966 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.264 | 54 | 105 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.16E-26 | 57 | 152 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-12 | 58 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.8E-14 | 59 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-19 | 61 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.45E-11 | 61 | 105 | No hit | No description |
PROSITE profile | PS51294 | 24.579 | 106 | 160 | IPR017930 | Myb domain |
SMART | SM00717 | 6.2E-14 | 110 | 158 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-14 | 111 | 153 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.17E-10 | 113 | 153 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-20 | 113 | 161 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MRQTEDGLPM RRSTSRSSQM RGIAQERAKL QDAPSKNAKW RTVAECIHRK TGVYSFKKRR 60 RWSEEENDVL IQMVQNLGTK NWSTIACAMP LRSRYQCRER WTYYLNPALN RQAWSEQDEV 120 TLIHAHEMHG NKWRELAKLF PGRTGKAVKN HWNGHMKRKL KSYLARGLPK QFQNLPVDPS 180 VSNRGWSTPK GSQDSFNNNQ LPSDLLIWSE SKRGLTETGE NASMLDGQSS DSIRSVSEGK 240 PMSSSPKGFG ARSADAQPKV DAGDGQIDRV VSKFPVVTDN DMETVVSSSS VDLKVCVAAP 300 SFVRSTSEEK QMSYTGLSPA HSSQSRYAHL DELSELHQSD IADLLDMSYC ESLMIIPPDS 360 PQSGNGGVPG M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-27 | 62 | 162 | 10 | 110 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g10075.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014756282.1 | 0.0 | myb-related protein B isoform X1 | ||||
TrEMBL | A0A0Q3PY29 | 0.0 | A0A0Q3PY29_BRADI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16796 | 9 | 12 | Representative plant | OGRP17808 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.1 | 6e-40 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g10075.1.p |
Entrez Gene | 104583495 |