PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g09810.1.p
Common NameBRADI_3g09810, LOC100841136
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 359aa    MW: 38311.7 Da    PI: 6.3184
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g09810.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.3e-30168226259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp++++ t++geHnh 
  Bradi3g09810.1.p 168 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPNTFILTFTGEHNHA 226
                       79*************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-30153228IPR003657WRKY domain
PROSITE profilePS5081133.568162228IPR003657WRKY domain
SuperFamilySSF1182901.7E-25164228IPR003657WRKY domain
SMARTSM007749.3E-36167227IPR003657WRKY domain
PfamPF031066.6E-25169225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEEEHYGNNW DLHAVVRFGC RRALSPPQPR AEPIVPPREK KKAEVLHLEK QGADAGWCFP  60
DLGASDRAGC GEDANELLKA FFAPPPPPPT LKPLPTQQQQ QQKQKQEMLQ PLMIPSEAQA  120
PLRSPTAAAP ARAQPSGRPA SGAVPRSKRR KNQQKKVVCH VAADGVSSDV WAWRKYGQKP  180
IKGSPYPRGY YRCSSSKGCP ARKQVERSRA DPNTFILTFT GEHNHAAPTH RNSLAGTSRN  240
KFPPPSSSSG PPPQPPPPSL LVAGEAAAAA HPSPPSTSTA GLSPTTPLRT TSMEEDDDEE  300
EDELLVEDME MAGEDDLLFL SGADSEDGAT PMSSLFDVDD PFLGSPWNGG GAAAGAGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-19151229280Disease resistance protein RRS1
5w3x_D8e-19151229280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g09810.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0613703e-99BT061370.1 Zea mays full-length cDNA clone ZM_BFb0140H07 mRNA, complete cds.
GenBankHQ8587193e-99HQ858719.1 Zea mays clone UT1178 WRKY transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571185.10.0WRKY transcription factor 22
TrEMBLI1HZD10.0I1HZD1_BRADI; Uncharacterized protein
STRINGBRADI3G09810.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.14e-52WRKY family protein