PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g09520.2.p
Common NameBRADI_3g09520, LOC100832971
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 379aa    MW: 42082.5 Da    PI: 6.7611
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g09520.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.22.3e-51101421128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwdL    ++ ++ + ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk
  Bradi3g09520.2.p  10 VPPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIREVDLNKLEPWDLIDrcRIGTGPQdEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDK 101
                       69****************************.9***************742455554445********************************** PP

               NAM  91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++l +   + + +gl+ktLvfy+grap+g+ktdW+mheyrl
  Bradi3g09520.2.p 102 AILLHgdsNARRIGLRKTLVFYTGRAPHGTKTDWIMHEYRL 142
                       ***987666677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-596164IPR003441NAC domain
PROSITE profilePS5100558.50410164IPR003441NAC domain
PfamPF023652.1E-2711142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MHPNVAPLTV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIREVDLNKL EPWDLIDRCR  60
IGTGPQDEWY FFSHKDKKYP TGTRTNRATA AGFWKATGRD KAILLHGDSN ARRIGLRKTL  120
VFYTGRAPHG TKTDWIMHEY RLDNDNADAP PQEDGWVVCR VFKKKSIQRG YEQPDHMLAG  180
ADELNQSSQF HATAGMALPV EEVDQKHGFH QHLMHMNGGV GGFIPTFDPS MHLPQLTSAE  240
TAPAFMSRSS THAPPVGLNN QLLDDIGFPS QSQNMMKLTT SCSGGDAGTG EMLLNGGEGV  300
RFGAGADWSI LDKLLESHQN LDQLFHGNGK LGGSAPAVLA PTLQQQQLRM DMGTSSLQRM  360
PFFHYLGCDA ADLLKYSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-51816615167NO APICAL MERISTEM PROTEIN
1ut4_B6e-51816615167NO APICAL MERISTEM PROTEIN
1ut7_A6e-51816615167NO APICAL MERISTEM PROTEIN
1ut7_B6e-51816615167NO APICAL MERISTEM PROTEIN
3swm_A8e-51816618170NAC domain-containing protein 19
3swm_B8e-51816618170NAC domain-containing protein 19
3swm_C8e-51816618170NAC domain-containing protein 19
3swm_D8e-51816618170NAC domain-containing protein 19
3swp_A8e-51816618170NAC domain-containing protein 19
3swp_B8e-51816618170NAC domain-containing protein 19
3swp_C8e-51816618170NAC domain-containing protein 19
3swp_D8e-51816618170NAC domain-containing protein 19
4dul_A6e-51816615167NAC domain-containing protein 19
4dul_B6e-51816615167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g09520.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572085.10.0NAC domain-containing protein 76
SwissprotQ5Z6B61e-103NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLI1HZ990.0I1HZ99_BRADI; Uncharacterized protein
STRINGBRADI3G09520.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.32e-84NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]