PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g09160.1.p | ||||||||
Common Name | BRADI_3g09160, LOC104583488 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | G2-like | ||||||||
Protein Properties | Length: 493aa MW: 54046.1 Da PI: 6.7168 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98.9 | 3.5e-31 | 107 | 160 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +F++ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+ Bradi3g09160.1.p 107 PRLRWTPDLHMAFIHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 160 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.766 | 103 | 163 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-28 | 103 | 161 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.6E-14 | 106 | 161 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.7E-22 | 107 | 162 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.4E-9 | 108 | 159 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MITREEEEIM RDVKEKQVLV EILEDEDDGK KRSMDGIRPL DLNEGVDVES EEGEVGDEDD 60 DGDDGGSTTD VAGSGSSSND VSGSQKGAGS GEQRVPSVRQ YNRSKLPRLR WTPDLHMAFI 120 HAVERLGGQE RATPKLVLQM MNVRGLSIAH VKSHLQMYRS KKLDHDGRQI RGSAISSVFS 180 PMDFHSMRGD RRFHDMYLQR SAGLSSRPEQ YGSFFAASRS GETSSRLYGI LQGRSPPMQT 240 FGFKNCGFRN QEWSFNQHDM IGRRDGKASS SSSATPHLFA SSPLRRWPLA PGAGAAGEHR 300 PERSIGYFAA GNNGSLAPIS RVVAPATSAV PGQGEGNRRL PFRWHGGDGS NDAKNRLSDP 360 VVIDEALESR LERQKHLEPR APTTTPADEA RHKRPPPEME TIDGTPDLKL SLSPTTADTY 420 TDRANKRKKI TAPSEQDMDD YCSNKISISL SLSPPAAPMS MQRQEKTIRG GSEEAALGQS 480 TLDLTMSIKA LE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 7e-18 | 108 | 162 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-18 | 108 | 162 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-18 | 108 | 162 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-18 | 108 | 162 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g09160.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073606 | 2e-60 | AK073606.1 Oryza sativa Japonica Group cDNA clone:J033048N17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010234086.1 | 0.0 | uncharacterized protein LOC104583488 | ||||
TrEMBL | I1HZ56 | 0.0 | I1HZ56_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G09160.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2754 | 36 | 86 | Representative plant | OGRP285 | 15 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 2e-34 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g09160.1.p |
Entrez Gene | 104583488 |