PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g08810.1.p | ||||||||
Common Name | BRADI_3g08810, LOC104583978 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 202aa MW: 20978.5 Da PI: 11.1205 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.6 | 0.00012 | 27 | 49 | 6 | 28 |
HHHHHHHHHHHHHHHHHHHCTSC CS HLH 6 nerErrRRdriNsafeeLrellP 28 + +Er RR+++N +++L l+ Bradi3g08810.1.p 27 KTVERVRRNQMNALYSRLDNLVR 49 679***************99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-6 | 27 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.47E-6 | 27 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0090575 | Cellular Component | RNA polymerase II transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MEMPPPPPPP PRRPAATGPA GGKPDRKTVE RVRRNQMNAL YSRLDNLVRA GGGAAPSPAP 60 AATRPDRLGE AAAYITQTAE RVERLKERKR ELTAARATTT EAGSGSGSGS GSSQQLEVQV 120 QHLGSGLHAI LATGGPPSDG ASFHRAVRAV EEAGGDVQNA HFSVVAARAV YTIHALVGEQ 180 PGSIERVVQR LKEAVRGHGG R* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g08810.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010236341.1 | 1e-140 | transcription factor bHLH162 | ||||
TrEMBL | I1HZ05 | 1e-138 | I1HZ05_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G08810.1 | 1e-139 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11987 | 29 | 38 | Representative plant | OGRP14459 | 4 | 4 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g08810.1.p |
Entrez Gene | 104583978 |