PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g08790.1.p | ||||||||
Common Name | BRADI_3g08790, LOC100826141 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 250aa MW: 26421.5 Da PI: 5.7714 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.1 | 4.4e-18 | 45 | 92 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++aa++ Bradi3g08790.1.p 45 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 92 57*****998.**********843...6*********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-12 | 45 | 92 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.54E-20 | 45 | 105 | No hit | No description |
SuperFamily | SSF54171 | 2.42E-21 | 46 | 104 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-31 | 46 | 104 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.1E-35 | 46 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.037 | 46 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-10 | 47 | 58 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-10 | 69 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MPEQDVCSPA SSGGSGTTSS SPPASPGFGS NRRARDDGVG GGRHPSYRGV RMRAWGKWVS 60 EIREPRKKSR IWLGTFPTPE MAARAHDAAA LVVKGPAAVL NFPDLASRLP RPASSSPRDV 120 QAAAVRAAAM DMGHLHHQQQ PAAAALSPSS PAPAMMLQQP VISAAADVVD DLDAIFELPR 180 LDDDATGHVF GGLTMADHHQ QSWCDPVWMD DDGCSYAQED MFGFGLDAAV DQYHGWGAPS 240 SVSALLWNL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-18 | 41 | 103 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g08790.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010234077.2 | 1e-180 | ethylene-responsive transcription factor ERF039 | ||||
TrEMBL | I1HZ03 | 1e-179 | I1HZ03_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G08790.1 | 1e-180 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 1e-26 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g08790.1.p |
Entrez Gene | 100826141 |