PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g08280.1.p
Common NameBRADI_3g08280
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 587aa    MW: 62243.2 Da    PI: 7.3299
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g08280.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.22.2e-11385427552
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                       h + ErrRR+r+N++fe Lr llP+       K++Ka++L  + eY++
  Bradi3g08280.1.p 385 HMISERRRRERLNESFEALRGLLPPG-----SKNDKATVLANTLEYMN 427
                       8899********************95.....5**************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.193380429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-16381454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-14383451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-9385427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-10386435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.34E-4395429No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MMDTLFVLGQ ESRLRILQQA AARVPGCAYI CVWAPINPGA AQQQQLLLPP PPLSSARSRG  60
HLLCCLDAWL RGDVGDRGRA LFQAYRGSLC GVESGCVPGW AFREGRSYME LPEHDLAASA  120
SLPLQLQFYQ MAAFVGCESG EIEMGVSAPT NNLRASVEQV FSEDFFQQSL LEELLQLPPT  180
RPSSSSSSIP SISVGSPAAD GASTSLPRST ATTMAMPMAA SSATPSPRDL SLAQQPLLHP  240
LFSRHAAYGH GQFPSAEADD AAMAQAMLAV ISSSSSPSSS SMPAFFGTRR GAHRGSSTTT  300
TAFRAYNAAL APRRAPGLGA AAGQRMIKRG ISILRRMHVL KCGYGQNHQD QQRAAAGAAV  360
QRRRDEVEEE EAAQPPAPSS SQLHHMISER RRRERLNESF EALRGLLPPG SKNDKATVLA  420
NTLEYMNILI TQIADLESKN RALEAAAQVY RPIVNGSSSR ESRRPDQALV QQGLLVEVST  480
SSGAGASTSS TPVSREVTIR VAAPGGDLSE LVTRVLRLLK ETGHRFTVVA VDASRHPAAG  540
GGGIAQASMT LRATAAGELD EASLREAVAK AVEGLVTPSD DDDESP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1388393ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g08280.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3617113e-44AK361711.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1146P09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316466.10.0putative transcription factor bHLH041 isoform X3
TrEMBLA0A2K2CVY20.0A0A2K2CVY2_BRADI; Uncharacterized protein
STRINGBRADI3G08280.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Representative plantOGRP1445644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-16bHLH family protein