PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g08240.3.p
Common NameBRADI_3g08240, LOC100843667
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 347aa    MW: 37207.1 Da    PI: 9.0708
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g08240.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.71.3e-17177210134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Bradi3g08240.3.p 177 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 210
                       *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.75E-13169212No hitNo description
SMARTSM004012.0E-18171222IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-14175210IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.268175207IPR000679Zinc finger, GATA-type
CDDcd002021.33E-12176204No hitNo description
PROSITE patternPS003440177202IPR000679Zinc finger, GATA-type
PfamPF003202.5E-15177210IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSTIYMSQLS TLPLMEGDQD QGHFQAFHLP KDPPILFPFM IDNPVEHQGQ GYGDQHLTQQ  60
FFGESSQQFN DHMMMAGGSD VFGTPSPFQP TIQSIGSDMI QRSSYNNPYD IKSKQAVSGL  120
TSEWASTTPP VKMRIVRKAA TSDPEGGAAR KPRRRAQANQ AEESQQQQHA MGVIRVCSDC  180
NTTKTPLWRS GPCGPKSLCN ACGIRQRKAR RAMAAAAVTA ANGRVTTAAS NGGAVAMVLG  240
TQASNAYQAA KPAKKEKRAA DVDRSLPFKK RCKMVDHAAI TITSESVASI AAPKEDQHHA  300
GEEGVAVAER PSKAGPPAAH FHGFPRDEIT DAAMLLMTLS CGLVRG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g08240.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571121.10.0putative GATA transcription factor 22
SwissprotQ6YW481e-136CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLI1HYT10.0I1HYT1_BRADI; Uncharacterized protein
STRINGBRADI3G08240.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.11e-19GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]