PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g07160.1.p
Common NameBRADI_3g07160, LOC100825616
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 410aa    MW: 43361.6 Da    PI: 5.6704
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g07160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.66.3e-91284092374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevsP 89 
                       +el+l+cA  ++ gdl++a++l  +    a p+g++  Rla++f++ALa r  +++    +  p+ +ts+++     s+ ++aa+ +++++ P
  Bradi3g07160.1.p  28 RELVLACAGLLHRGDLAAARRLADQALSAADPRGEASDRLAHHFARALALRAPDNGGDSPSPAPVASTSSSSsssvsSAAAAAAYLAYNKIAP 120
                       5789************************************************99665555555444444333344445555555666****** PP

              GRAS  90 ilkfshltaNqaIleavege.........ervHiiDfdisqGlQWpaLlqaLasRp.egpp.slRiTgvgspesgskeeleetgerLakfAee 171
                       +l+f+hltaNqaIlea+ ++         + +Hi+D+d+ +G+QWp+LlqaL +R+ ++pp ++R+Tg g+    ++++l +tg+rL+ fA++
  Bradi3g07160.1.p 121 FLRFAHLTANQAILEAFFSShadrpqhhsRVLHIVDLDAAHGVQWPPLLQALRDRAaDDPPvEVRVTGAGP----DRDALLRTGNRLRAFAAS 209
                       ****************9776677777774555************************744556*********....9***************** PP

              GRAS 172 lgvpfefnvlvak.rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerfleal 261
                       +++pf+f++l+     ++    eL+++p +E+laVn+v+ lhrl  ++++l+     +L+ v+s++P v++++e+e +   + ++ +r++ a+
  Bradi3g07160.1.p 210 IDLPFRFHPLLLPcPGAASAGLELELHPdEETLAVNCVFFLHRLS-NDGELAT----FLRWVNSMNPAVLTIAEREGSSePADELPRRVAAAM 297
                       *********9666466666778999999999*************7.6666766....*******************9997899********** PP

              GRAS 262 e.yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve 352
                       + yy+a+fd+lea++p+ s er+ vE+e+lgrei  vva    +   r++ +e W ++ + aG++p p s +aa+qa+lllr ++ s+gy  e
  Bradi3g07160.1.p 298 DlYYAAVFDALEATVPPGSAERMAVEEEILGREIDAVVAGGSGS---RTRGFEAWAAAARGAGLSPRPASAFAAAQARLLLRLHYpSEGYAAE 387
                       867899********************************998888...99******************************************** PP

              GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                       e +g+ +lgW++rpL+svS+W+
  Bradi3g07160.1.p 388 EAHGACFLGWQRRPLMSVSSWQ 409
                       *********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.7721388IPR005202Transcription factor GRAS
PfamPF035142.2E-8828409IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MLGPPEPDDD DATASASPPH HGPDPTPREL VLACAGLLHR GDLAAARRLA DQALSAADPR  60
GEASDRLAHH FARALALRAP DNGGDSPSPA PVASTSSSSS SSVSSAAAAA AYLAYNKIAP  120
FLRFAHLTAN QAILEAFFSS HADRPQHHSR VLHIVDLDAA HGVQWPPLLQ ALRDRAADDP  180
PVEVRVTGAG PDRDALLRTG NRLRAFAASI DLPFRFHPLL LPCPGAASAG LELELHPDEE  240
TLAVNCVFFL HRLSNDGELA TFLRWVNSMN PAVLTIAERE GSSEPADELP RRVAAAMDLY  300
YAAVFDALEA TVPPGSAERM AVEEEILGRE IDAVVAGGSG SRTRGFEAWA AAARGAGLSP  360
RPASAFAAAQ ARLLLRLHYP SEGYAAEEAH GACFLGWQRR PLMSVSSWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-443440826378Protein SCARECROW
5b3h_A1e-443440825377Protein SCARECROW
5b3h_D1e-443440825377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g07160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571074.10.0protein MONOCULM 1
SwissprotQ84MM91e-126MOC_ORYSJ; Protein MONOCULM 1
TrEMBLI1HYD10.0I1HYD1_BRADI; Uncharacterized protein
STRINGBRADI3G07160.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Representative plantOGRP54911421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-60GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]