PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g06957.3.p | ||||||||
Common Name | LOC100823174 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C3H | ||||||||
Protein Properties | Length: 230aa MW: 24644.8 Da PI: 9.5746 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.6 | 1.3e-10 | 187 | 212 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +far G C yGd+C+ aH++ Bradi3g06957.3.p 187 FKTKLCGHFAR-GSCTYGDNCRSAHSM 212 69*********.*************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.319 | 8 | 36 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 11 | 9 | 35 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 1.75E-15 | 104 | 177 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 6.4E-13 | 108 | 178 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 1.1E-17 | 108 | 177 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 16.332 | 109 | 173 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.42E-16 | 111 | 174 | No hit | No description |
Pfam | PF00013 | 4.0E-15 | 111 | 175 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-13 | 184 | 218 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.3E-7 | 185 | 217 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-6 | 186 | 212 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.3 | 186 | 213 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-8 | 187 | 211 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
PESSQTGARS KWPCTRFFST AGCCFGENCR FIHYFPGSYQ APADPPRSIS WGPAVPDDSL 60 TQTAERKLGK YMSKDNSVPL LREQRPTDHC TPQQAPIHGT VSAASFGASA TAKISVAASL 120 AGAIIGRGGV NIKQISRDSG AKVRIQHHES DSKLKNVELQ GTFDQIKKAS TMVMELIGIG 180 SETASNFKTK LCGHFARGSC TYGDNCRSAH SMSELRKPAI APRDRPGGW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g06957.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014755911.1 | 1e-170 | zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q7F8R0 | 3e-69 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A2K2CVN2 | 1e-170 | A0A2K2CVN2_BRADI; Uncharacterized protein (Fragment) | ||||
STRING | BRADI3G06957.1 | 1e-169 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25139 | 4 | 5 | Representative plant | OGRP1026 | 17 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 6e-55 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g06957.3.p |
Entrez Gene | 100823174 |