PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g06940.1.p
Common NameBRADI_3g06940, LOC100823269
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 301aa    MW: 31073 Da    PI: 9.8388
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g06940.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.5e-08100125227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       kt+lC+ +     Ck Gd+C+FaHg+
  Bradi3g06940.1.p 100 KTRLCNKYNTAEGCKWGDKCHFAHGE 125
                       9***********************96 PP
2zf-CCCH34.82.8e-11266291127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +kt+lC +f + G C +GdrC+FaHg+
  Bradi3g06940.1.p 266 FKTKLCENFTK-GSCTFGDRCHFAHGE 291
                       69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.5963260IPR000571Zinc finger, CCCH-type
SMARTSM003561.63259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-63360IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-83358IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-1495128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-897129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.87898126IPR000571Zinc finger, CCCH-type
SMARTSM003560.04998125IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-5100125IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.94E-14164239IPR004088K Homology domain, type 1
SMARTSM003221.4E-8168238IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.6E-14169237IPR004088K Homology domain, type 1
PROSITE profilePS5008414.487169233IPR004088K Homology domain, type 1
CDDcd001053.20E-12171233No hitNo description
PfamPF000131.9E-10171234IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.105.4E-16264296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.009265292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-9265295IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-8265291IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-9266291IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEGGGRKRGG ANGASTGGKR ARESESIQTG VGSKSKPCTK FFSTAGCPFG EGCHFLHNFP  60
GGHQAVAKMS NLGGTTFAHP PGRMPTGPAG PDAPPTPTIK TRLCNKYNTA EGCKWGDKCH  120
FAHGERELGK HTFIDSSIPP HMGPRPTSHF APPAMPNPGM VTPASFGASA TAKISVDGSL  180
AGAIIGRGGI NTKQISRVTG AKLAIRDHES DDSLKNIELE GTFDQIKNAS AMVTDLIVSI  240
SGSNALPPGK NPAAVSHRGG GPGGNFKTKL CENFTKGSCT FGDRCHFAHG ENELRKSAAV  300
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g06940.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571204.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-164C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLI1HYA30.0I1HYA3_BRADI; Uncharacterized protein
STRINGBRADI3G06940.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-56C3H family protein