PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g06472.1.p

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

MYB

Protein Properties

Length: 305aa MW: 32329.3 Da PI: 8.3944

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g06472.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.7	6.4e-19	11	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+++G ++W++I r ++ gR++k+c++rw + Bradi3g06472.1.p 11 KGPWSPEEDEALRRLVERHGARNWTAIGRGIP-GRSGKSCRLRWCNQ 56 79****************************.*********985 PP
2	Myb_DNA-binding	53.6	5.1e-17	63	106	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eEd +++a+++lG++ W++Iar ++ gRt++ +k++w++ Bradi3g06472.1.p 63 RRPFTAEEDASILRAHARLGNR-WAAIARLLP-GRTDNAVKNHWNS 106 679*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.481	6	61	IPR017930	Myb domain
SuperFamily	SSF46689	2.51E-31	8	104	IPR009057	Homeodomain-like
SMART	SM00717	9.6E-17	10	59	IPR001005	SANT/Myb domain
Pfam	PF00249	3.9E-18	11	56	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.9E-25	12	64	IPR009057	Homeodomain-like
CDD	cd00167	3.99E-16	13	55	No hit	No description
SMART	SM00717	4.4E-15	62	110	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.461	63	112	IPR017930	Myb domain
Pfam	PF00249	6.0E-15	63	106	IPR001005	SANT/Myb domain
CDD	cd00167	5.21E-12	65	108	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-23	65	112	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MGAEAECDRI KGPWSPEEDE ALRRLVERHG ARNWTAIGRG IPGRSGKSCR LRWCNQLSPQ 60 VERRPFTAEE DASILRAHAR LGNRWAAIAR LLPGRTDNAV KNHWNSSLKR KLATATAAWE 120 GDAVSGDGSG SGGESEPPRP CKRASPGPGP ESPTGSDRSE LSHGSGQVFR PVPRAGGFDA 180 IISADVVRPP PPRPEEDPLT SLSLSLPGLD QGFHHDSARS HFQELSPSPR SPSPPPAQPA 240 YPFSGDLVAA MQEMIRAEVR KYMSGVGLPA GCGTGAVGEA CIPQLVEGVM RAAAERVGGV 300 VARQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-41	8	114	4	110	B-MYB
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00653	PBM	Transfer from LOC_Os02g09480	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g06472.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ353858	1e-158	DQ353858.1 Triticum aestivum MYB transcription factor TaMYB1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024318409.1	0.0	transcription factor MYB44-like
TrEMBL	A0A2K2CVJ9	0.0	A0A2K2CVJ9_BRADI; Uncharacterized protein
STRING	BRADI3G06470.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP789	38	154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	1e-59	myb domain protein r1

Link Out ? help Back to Top
Phytozome	Bradi3g06472.1.p