PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g06160.1.p

Common Name

BRADI_3g06160, LOC100835852

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 241aa MW: 25814.9 Da PI: 10.2066

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g06160.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	25.1	3.8e-08	143	185	21	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 21 RqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 RqRKk+++ e ++ v +L+aeN +L +e+ l+ +++l +e+ Bradi3g06160.1.p 143 RQRKKMRLPEVQQLVRSLTAENGSLHEEMRALQRACSALAKEN 185 9**************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.5E-5	143	181	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MATHDEAVAA DIICSLRGAD LAGWTPPWSK RVEAEAAAAG ELSWPAVARG KRSRRRSPSS 60 APAPEGKKGR RCAARSSPPS PLEYSAGSAS LRSGASTSGG EDGGSGFCSP WHRRAAPATT 120 KVESIRRPQL TFPAPPLRPT GQRQRKKMRL PEVQQLVRSL TAENGSLHEE MRALQRACSA 180 LAKENDKLEA RVEQRSNSQN AIALKEEKGK QQIDQQPPND SFALPDLNLP AQDNADAVHC 240 *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	148	RQRKKMR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g06160.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010233917.1	1e-173	uncharacterized protein LOC100835852
TrEMBL	I1HY06	1e-172	I1HY06_BRADI; Uncharacterized protein
STRING	BRADI3G06160.1	1e-173	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3790	29	51
Representative plant	OGRP14446	2	2

Link Out ? help Back to Top
Phytozome	Bradi3g06160.1.p
Entrez Gene	100835852