PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g06120.1.p | ||||||||
Common Name | BRADI_3g06120, LOC100846210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ARR-B | ||||||||
Protein Properties | Length: 616aa MW: 66928.4 Da PI: 6.6442 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.6 | 5.9e-28 | 199 | 252 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ +t+e+v+SHLQkYRl Bradi3g06120.1.p 199 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVENITRENVASHLQKYRL 252 79*******************.********************************8 PP | |||||||
2 | Response_reg | 76.2 | 1.2e-25 | 23 | 131 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 vl vdD+p+ +++l+++l + +y +v+++ ++ al++l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+ge +++ + + Bradi3g06120.1.p 23 VLAVDDDPTCLKVLESLLLRCDY-HVTTTGQAATALRMLRENKdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETQTVMKGIT 113 799********************.***************888889*******************87754.558******************** PP TTESEEEESS--HHHHHH CS Response_reg 92 aGakdflsKpfdpeelvk 109 Ga d+l Kp+ e+l + Bradi3g06120.1.p 114 HGACDYLLKPVRLEQLKT 131 ***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 3.7E-181 | 1 | 615 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 1.85E-35 | 20 | 144 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 9.7E-43 | 20 | 169 | No hit | No description |
SMART | SM00448 | 4.6E-32 | 21 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.32 | 22 | 137 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.7E-23 | 23 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 9.69E-28 | 24 | 136 | No hit | No description |
PROSITE profile | PS51294 | 11.189 | 196 | 255 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-30 | 196 | 257 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.63E-20 | 197 | 256 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-24 | 199 | 252 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.2E-6 | 201 | 251 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 616 aa Download sequence Send to blast |
MTVEGRVSVV DDGRDRFPVG MRVLAVDDDP TCLKVLESLL LRCDYHVTTT GQAATALRML 60 RENKDRFDLV ISDVHMPDMD GFKLLELVGL EMDLPVIMLS ANGETQTVMK GITHGACDYL 120 LKPVRLEQLK TIWQHVVRRN TKTRGNDNDD AGQKVQNGDG ENGGANRNKR QSRRDENGDD 180 GDDSDENSNE NADASSQKKP RVVWSVELHR KFVAAVNQLG IDKAVPKKIL DLMNVENITR 240 ENVASHLQKY RLYLKRMSMD ASRQANLVAA LGGRNPAYGN MNSLDVFRHY NNAYGRYPPV 300 PTTTHSQSNN LVARMNSPSA FGMHGLLSSQ PLQHGHAQTN MGTSLNDLGV NNGNMIRAAQ 360 MPTMVTGTSC NSFTNISNGA PLAPANRSVQ PLESSNRQHL GQIHLSSTDS FSSFVGESHH 420 FPDLGRTSNT WQTAVPSNIQ ELGHNGSMSQ ATLHVNGPRN PVSSFTSASN QIPTLGNGLQ 480 SQVASLASNP LPVTFNQDAS PFTYGSSTNS REVLNGNLAF SNSGINTSLP NLRIDNPIVP 540 RHTLDGSNAG DVPSLQDGRI DQQAVGNQLH YNNDLVATSR LQRGLSGSLD DIVVDMFRPD 600 SGNGGSFIDA DWGLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-25 | 195 | 258 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g06120.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003570765.1 | 0.0 | two-component response regulator ORR24 | ||||
Swissprot | Q6H805 | 0.0 | ORR24_ORYSJ; Two-component response regulator ORR24 | ||||
TrEMBL | I1HXZ9 | 0.0 | I1HXZ9_BRADI; Two-component response regulator | ||||
STRING | BRADI3G06120.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8147 | 34 | 47 | Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-112 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g06120.1.p |
Entrez Gene | 100846210 |
Publications ? help Back to Top | |||
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