PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g06070.1.p
Common NameBRADI_3g06070, LOC100836462
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 346aa    MW: 37683.3 Da    PI: 7.914
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g06070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.29.7e-30185244159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dgy+WrKYGqK+ k++++pr+Y+rC++a  Cpvkkkv+rsaed +v++ tYegeHnh 
  Bradi3g06070.1.p 185 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApACPVKKKVQRSAEDRTVLVATYEGEHNHG 244
                       58***************************99****************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.119180246IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.7E-29183246IPR003657WRKY domain
SuperFamilySSF1182901.57E-25184246IPR003657WRKY domain
SMARTSM007742.0E-34185245IPR003657WRKY domain
PfamPF031061.3E-24186243IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0002238Biological Processresponse to molecule of fungal origin
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009623Biological Processresponse to parasitic fungus
GO:0009651Biological Processresponse to salt stress
GO:0009685Biological Processgibberellin metabolic process
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDPWIGSQPS LSLDLHVGLG HHHRHQAQPV VALVKPKILV EENFLPLKKD PEVAGLEAEL  60
QRVSEENRRL GEMLREVAAK YESLQGQYSD MTNAANNYSH PSSASTEGGS VSPSRKRKSS  120
DSLDGHTPSP PPPPQLSFVP EQQAECTSGE PCNKRVRPAA ASEECKPVVS KRYVHADPSD  180
LSLVVKDGYQ WRKYGQKVTK DNPCPRAYFR CSFAPACPVK KKVQRSAEDR TVLVATYEGE  240
HNHGQPPPAQ PQQQQQHDGK NGAAKPPQAP VAAAAALHQQ HQQQKQEQEA AVVNGEAAAA  300
ASELIRRNLA EQMAMTLTMD PSFKAALVTA LSGRIFELSP TKDLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-211842471375WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113118SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1 (PubMed:15047897). Regulates, probably indirectly, the activation of defense-related genes such as GF14E during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). Confers resistance to the virulent bacterial pathogen X.oryzae pv. oryzae (Xoo) 13751, probably via the regulation of NPR1 and PR1b defense signaling pathways (PubMed:16919842). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:15047897, ECO:0000269|PubMed:16919842}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g06070.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide and fungal cerebroside elicitors) and pathogen infection (e.g. the compatible pathogenic fungus M.grisea race 007, M.grisea crabgrass BR29). Accumulates in response to M.oryzae (By similarity). Triggered by defense signaling molecules, such as salicylic acid (SA), methyl jasmonate (MeJA), 1-aminocyclo-propane-1-carboxylic acid (ACC), wounding and pathogen infection (e.g. X.oryzae) (PubMed:16919842). Repressed by gibberellic acid (GA) (at protein level) (PubMed:15047897). Induced by abscisic acid (ABA) in aleurone cells, roots and leaves (PubMed:25110688). Accumulates in response to uniconazole, a GA biosynthesis inhibitor. Triggered strongly by cold in leaves, stems and developing spikes, but moderately by drought and salt stresses (By similarity). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:15047897, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570741.10.0WRKY transcription factor WRKY71
SwissprotQ6IEL01e-142WRK71_ORYSI; WRKY transcription factor WRKY71
TrEMBLI1HXZ30.0I1HXZ3_BRADI; Uncharacterized protein
STRINGBRADI3G06070.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP182238103
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-48WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]