PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g05800.1.p
Common NameBRADI_3g05800, LOC100829198
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CO-like
Protein Properties Length: 380aa    MW: 39404.8 Da    PI: 6.0071
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g05800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box223.3e-0756101342
          zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                        ++C+ +e  ++   C+ +   lC++C   +H        H++vp+
  Bradi3g05800.1.p  56 VWVCEVCELAPAAVTCRADAAALCASCDADIHDAnplarrHERVPV 101
                       689*****************************44788888999986 PP
2CCT70.63.8e-24292335144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       Rea+l+RY+eKrk+R+FeK+irY+sRKa+AesRpRvKGrF+k++
  Bradi3g05800.1.p 292 REARLMRYREKRKNRRFEKTIRYASRKAYAESRPRVKGRFAKRT 335
                       9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.9E-41258IPR000315B-box-type zinc finger
PROSITE profilePS5011910.6854101IPR000315B-box-type zinc finger
PfamPF006433.0E-555101IPR000315B-box-type zinc finger
CDDcd000217.41E-857101No hitNo description
SMARTSM003361.9E-859101IPR000315B-box-type zinc finger
PROSITE profilePS5101716.986292334IPR010402CCT domain
PfamPF062034.7E-18292334IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MEMQGIGRYW GVGGRRCGSC GGSPATSHCR TCGGGESSYL CAGCDAAHAR AGHERVWVCE  60
VCELAPAAVT CRADAAALCA SCDADIHDAN PLARRHERVP VRPIGSSESE IDDAGDIGHV  120
SHGSRLLGGG GKADAIVGGG KENAMMKMDF LFADVMAEMD PFFGPEFARF PHADSVVPSN  180
NNHGGSGPGA VELDFGRVAA APVSKPSSYS SYTAASLGGS GSSSEVGLVP DAICGRGGGI  240
IELDFSLSKA AYLPYAPTPT HSVSSTVDVA AVPERGAVDG AASTAATGEM SREARLMRYR  300
EKRKNRRFEK TIRYASRKAY AESRPRVKGR FAKRTEDADA DADADADADA DAAATDMATA  360
RAPSCVLDFG SYYGVVPTF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g05800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570553.10.0zinc finger protein CONSTANS-LIKE 5 isoform X2
TrEMBLI1HXW20.0I1HXW2_BRADI; Uncharacterized protein
STRINGBRADI3G05800.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38442348
Representative plantOGRP6911767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.19e-24CONSTANS-like 3