PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g05500.6.p | ||||||||
Common Name | BRADI_3g05500, LOC100842553 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | G2-like | ||||||||
Protein Properties | Length: 356aa MW: 37995.2 Da PI: 8.4735 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107 | 1.1e-33 | 49 | 103 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Bradi3g05500.6.p 49 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 103 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-32 | 46 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.801 | 46 | 106 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.76E-16 | 48 | 104 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-23 | 49 | 104 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.6E-8 | 51 | 101 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.1E-20 | 145 | 189 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010088 | Biological Process | phloem development | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MFSSKKGGGS SGGGGAAVQV QGSNNSSVAA AAGMCVQGDS GLVLTTDPKP RLRWTVELHE 60 RFVDAVAQLG GPDKATPKTI MRVMGVKGLT LYHLKSHLQK FRLGKQPHKD FNDHAVKDAA 120 AAMEMHRNAA SSSGMMGRNM NDRNVHMNEA IRMQMEVQRR LHEQLEKHLQ MRIEAQGKYM 180 QSILEKAYQS LGSGEPAAGY KSLGGVLDVC SIKDIGAASM GFPSLQDLHL YGDLQQNQPI 240 ESFFACSDGG IGPPLGKMKR SSAGHYTAGG KSPMMWGSDD DGDQDKDDQL LQMAPPMMMG 300 EDMVDSIAAG VHEAAKPMMS HAMSGGGESK LERPSPRRPH LGGGQRMGSP SVIYG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-18 | 49 | 105 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-18 | 49 | 105 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-18 | 49 | 105 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-18 | 49 | 105 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g05500.6.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951955 | 1e-172 | JF951955.1 Aegilops tauschii clone TaMYB72 MYB-related protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010233884.1 | 0.0 | myb family transcription factor APL isoform X2 | ||||
Swissprot | Q9SAK5 | 1e-89 | APL_ARATH; Myb family transcription factor APL | ||||
TrEMBL | A0A0Q3HJP4 | 0.0 | A0A0Q3HJP4_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G05500.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79430.2 | 3e-82 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g05500.6.p |
Entrez Gene | 100842553 |
Publications ? help Back to Top | |||
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