PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g03970.1.p | ||||||||
Common Name | BRADI_3g03970, LOC100828399 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 215aa MW: 23317.3 Da PI: 10.8103 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.3 | 5.2e-18 | 88 | 143 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rrk+ ++t+eq Lee F+ ++ +s+ e+++LA++l+L rqV vWFqNrRa+ k Bradi3g03970.1.p 88 RRKKLRLTEEQAALLEESFRAHNVLSHGEKQDLARRLRLRARQVEVWFQNRRARTK 143 79999*************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 108.5 | 4.8e-35 | 89 | 177 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl++eq++lLEesF++++ L++ +K++lar+L+l++rqv+vWFqnrRARtk+kq+E d++ L+r +d+l+++n+ L+++ ++Lr+ Bradi3g03970.1.p 89 RKKLRLTEEQAALLEESFRAHNVLSHGEKQDLARRLRLRARQVEVWFQNRRARTKLKQTELDCDLLRRLCDRLTHDNALLRRQLADLRS 177 69***********************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-17 | 58 | 146 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.491 | 85 | 145 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-14 | 87 | 149 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.98E-18 | 87 | 153 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.40E-7 | 88 | 146 | No hit | No description |
Pfam | PF00046 | 1.9E-15 | 88 | 143 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 120 | 143 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 6.7E-7 | 145 | 188 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MSSVSTISSS GMAMAISMED SPEDHQLVDT RLSLFSGAGL SRPPPPQALL LQAAPQPEHQ 60 ASPAGRKKKA GSKQNKRAEE MGSGDGARRK KLRLTEEQAA LLEESFRAHN VLSHGEKQDL 120 ARRLRLRARQ VEVWFQNRRA RTKLKQTELD CDLLRRLCDR LTHDNALLRR QLADLRSAGS 180 GSSSGSSSSS SRLTWNSSDA CPSCSKIAGA GLSL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 145 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g03970.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005412 | 3e-36 | AP005412.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0050G13. | |||
GenBank | AP014958 | 3e-36 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 3e-36 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003570938.2 | 1e-152 | putative homeobox-leucine zipper protein HOX26 | ||||
Swissprot | Q67UX6 | 6e-41 | HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26 | ||||
TrEMBL | I1HX94 | 1e-151 | I1HX94_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G03970.1 | 1e-151 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8315 | 32 | 49 | Representative plant | OGRP196 | 16 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-20 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g03970.1.p |
Entrez Gene | 100828399 |