PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi3g03800.1.p | ||||||||
Common Name | BRADI_3g03800, LOC100846018 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 359aa MW: 38303.3 Da PI: 5.0774 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.7 | 2.4e-16 | 265 | 302 | 1 | 36 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 C +Cg ++ Tp++R+gpdg++tLCnaCGl ++ kg++ Bradi3g03800.1.p 265 CKHCGKSSdmTPMMRKGPDGPRTLCNACGLSWANKGHM 302 ***********************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 6.0E-8 | 128 | 163 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 13.654 | 128 | 163 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.9E-11 | 130 | 162 | IPR010399 | Tify domain |
Pfam | PF06203 | 1.3E-16 | 190 | 232 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.967 | 190 | 232 | IPR010402 | CCT domain |
SMART | SM00401 | 4.4E-11 | 259 | 312 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.47E-11 | 263 | 315 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.1E-14 | 264 | 306 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.90E-14 | 264 | 308 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 265 | 292 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 6.1E-14 | 265 | 302 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 359 aa Download sequence Send to blast |
MSGHHDATKP YQPRRGPERP PPPPQPAEGD ADAGAVPEAE AEPLAMEQYE PEPLQYEPHP 60 EHEEEEMEEG DEEEEDEEEG EGGHGHEYAY DYGTGEAVPM DADAAPHAQM QGAMLPMPAN 120 AEAGGGGPHA ASNTLTLSFN GEVFVFESVS PDKVQAVLLL LGGRELAPGL GGGPSSSASY 180 SKRMNYHPHR MASLMRFRQK RSERNFDKKI RYSVRKEVAH RMQRHKGQFT SAKAKAEDGA 240 SPVTTSDGLT NWGAVEGRPP SAAICKHCGK SSDMTPMMRK GPDGPRTLCN ACGLSWANKG 300 HMRDISKCST APLQVVPPAN SDAPNGTTEA APVDKQQHLA IEAAPVVQPA PAANGHDS* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi3g03800.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003574659.1 | 0.0 | GATA transcription factor 17 | ||||
Swissprot | Q6Z433 | 1e-106 | GAT17_ORYSJ; GATA transcription factor 17 | ||||
TrEMBL | I1HX69 | 0.0 | I1HX69_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G03800.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4325 | 38 | 68 | Representative plant | OGRP831 | 16 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21175.1 | 1e-54 | ZIM-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi3g03800.1.p |
Entrez Gene | 100846018 |
Publications ? help Back to Top | |||
---|---|---|---|
|