PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g03538.2.p

Common Name

BRADI_3g03538, LOC100844682

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

G2-like

Protein Properties

Length: 470aa MW: 52005.3 Da PI: 6.8281

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g03538.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.6	5.9e-33	281	335	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt eLHerFvea+++LGG+ekAtPk +l+lmkv+gLt++hvkSHLQkYRl Bradi3g03538.2.p 281 KTRMRWTLELHERFVEALKKLGGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRL 335 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.8	278	338	IPR017930	Myb domain
SuperFamily	SSF46689	3.05E-17	280	335	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.2E-30	280	336	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-25	281	336	IPR006447	Myb domain, plants
Pfam	PF00249	3.1E-9	283	334	IPR001005	SANT/Myb domain
Pfam	PF14379	4.7E-20	371	415	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MSTQSVIAVK QPPVQHLHSM ESQWNLNDAH TCSAKQPPVH RMFSVISDDC ASTSDARSSC 60 TTQFSTIKTE LIRSSSMTKI LPFELQKCST TDFNPGRSFS HVSQTDLSDP ILSSSSTFCT 120 SLYSSLSTNS KCRETGALPF LPHPRKLEQQ HSSAGQSPNS SLLLAADPSN SGHGDAEHSD 180 DLKDFLNLSG DASGSGFHEG ISNCMDFNEQ MEFQFLSEQL GIAITDNEEI PRLDDIYGRP 240 QQPLALPLSS SSDQEDGRDA GSPVKVQLSS SSSSGAAGCN KTRMRWTLEL HERFVEALKK 300 LGGPEKATPK GVLKLMKVEG LTIYHVKSHL QKYRLAKYIP EKKEEKKPSS EDKKAQSTAD 360 GIDPAKKKSL QMAEALRMQI EVQKQLHEQL EVQRELQLRI EEHARYLQLI LEQQKVRKCP 420 SSMKSSMEGE SSGSKPKEKT EMRAETPSAP SPKRKFPDID IEHNQQTDN*

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MSTQSVIAVK QPPVQHLHSM ESQWNLNDAH TCSAKQPPVH RMFSVISDDC ASTSDARSSC  60
TTQFSTIKTE LIRSSSMTKI LPFELQKCST TDFNPGRSFS HVSQTDLSDP ILSSSSTFCT  120
SLYSSLSTNS KCRETGALPF LPHPRKLEQQ HSSAGQSPNS SLLLAADPSN SGHGDAEHSD  180
DLKDFLNLSG DASGSGFHEG ISNCMDFNEQ MEFQFLSEQL GIAITDNEEI PRLDDIYGRP  240
QQPLALPLSS SSDQEDGRDA GSPVKVQLSS SSSSGAAGCN KTRMRWTLEL HERFVEALKK  300
LGGPEKATPK GVLKLMKVEG LTIYHVKSHL QKYRLAKYIP EKKEEKKPSS EDKKAQSTAD  360
GIDPAKKKSL QMAEALRMQI EVQKQLHEQL EVQRELQLRI EEHARYLQLI LEQQKVRKCP  420
SSMKSSMEGE SSGSKPKEKT EMRAETPSAP SPKRKFPDID IEHNQQTDN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-25	281	338	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-25	281	338	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-25	281	338	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-25	281	338	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-25	281	338	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-25	281	338	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-25	281	338	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-25	281	338	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g03538.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003570911.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3 isoform X1
Swissprot	Q6YXZ4	1e-175	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	A0A0Q3F128	0.0	A0A0Q3F128_BRADI; Uncharacterized protein
STRING	BRADI3G03538.2	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4526	37	69
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	5e-71	G2-like family protein

Link Out ? help Back to Top
Phytozome	Bradi3g03538.2.p
Entrez Gene	100844682

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]