PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g03510.2.p
Common NameBRADI_3g03510, LOC100827905
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family SBP
Protein Properties Length: 486aa    MW: 52242 Da    PI: 8.2578
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g03510.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.14e-41188264278
                       -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       CqvegC++dls+ak+yhr+h+vCevhsk+p+v+v+gle+rfCqqCsrfh+l efD+ krsCrrrL++hn+rrrk+q+
  Bradi3g03510.2.p 188 CQVEGCRVDLSSAKDYHRKHRVCEVHSKTPKVVVAGLERRFCQQCSRFHALAEFDQIKRSCRRRLNDHNHRRRKPQP 264
                       **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-32180249IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.359185262IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.41E-39187267IPR004333Transcription factor, SBP-box
PfamPF031101.3E-30188261IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MGSFGMDWNQ KSSVLWDWEN LLPAGTNAAE NPKNGMQAEQ RFASVVAAMA NESRHSSGSS  60
GTFSSNSEMG YGSSKSSLSA SIDSSSKVGN SMEFRFAAAA NPDSNNSKNT ELGKVDDTGA  120
GTSPSSVIAV SSGEPVIGLK LGKRTYFEDA CGAQNVKNSP LGAGAPNPSP ASVKKAKVDQ  180
QKPHNSYCQV EGCRVDLSSA KDYHRKHRVC EVHSKTPKVV VAGLERRFCQ QCSRFHALAE  240
FDQIKRSCRR RLNDHNHRRR KPQPEAISFS TSRLSTMFYD ARQQTSLLFS EAPYVQMRNC  300
ASSSWDDPGP GGFKFTETKA PWLKPTTAAG VDAMHLSSQQ VSNSIMPHGA HHGFDGFMSF  360
KGTGMKFLNQ GVEASTVVSD TSGAPDLQHA LSLLSNNPAG AGNLQPSPQM HSGTTADIAG  420
TSNPAMHVLG SSPGLWLDGP PLDNHHPRFQ AFDLLGGHDS TMPHELQLPK PSYDHHAASH  480
FDRMH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-271882611184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g03510.2.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316148.10.0squamosa promoter-binding-like protein 3
RefseqXP_024316149.10.0squamosa promoter-binding-like protein 3
RefseqXP_024316150.10.0squamosa promoter-binding-like protein 3
RefseqXP_024316151.10.0squamosa promoter-binding-like protein 3
RefseqXP_024316152.10.0squamosa promoter-binding-like protein 3
SwissprotA2X0Q60.0SPL3_ORYSI; Squamosa promoter-binding-like protein 3
SwissprotA3A2Z80.0SPL3_ORYSJ; Squamosa promoter-binding-like protein 3
TrEMBLI1HX290.0I1HX29_BRADI; Uncharacterized protein
STRINGBRADI3G03510.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.36e-46squamosa promoter binding protein-like 2