PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g02800.4.p
Common NameBRADI_3g02800
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family BES1
Protein Properties Length: 513aa    MW: 57040.3 Da    PI: 7.1384
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g02800.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822157.31.1e-48501924144
            DUF822   4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspesslq 95 
                       g++++++E+E++k+RER+RR i++ ++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r + +pl   +++ g+++ +s+e++  
  Bradi3g02800.4.p  50 GEREREREKERTKLRERHRRSITSHMLAGLRQHGNFPLPARADMNDVLAALARAAGWTVQPDGTTFRSSPQPLlPPPAQFGAFQVTSVETPAL 142
                       678999*******************************************************************999***************99 PP

            DUF822  96 .sslkssalaspvesysaspksssfpspssldsislasaasllpvlsvls 144
                        ++l+s+a+ +p++s+ + +++++++spsslds+ +a+++       + +
  Bradi3g02800.4.p 143 aNALNSYAVGTPLDSQTSALQTDDSLSPSSLDSVVVAEQSIKNENYGNSC 192
                       899*********************************99844333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.8E-4850199IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.01E-111218509IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.4E-125218509IPR013781Glycoside hydrolase, catalytic domain
PfamPF013733.2E-64241509IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.8E-30256270IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.8E-30277295IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.8E-30299320IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.8E-30392414IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.8E-30465484IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MSTKHPHAHP RDADPAASPP PAPPPPPSRR ARGGFASSAP APPATARRRG EREREREKER  60
TKLRERHRRS ITSHMLAGLR QHGNFPLPAR ADMNDVLAAL ARAAGWTVQP DGTTFRSSPQ  120
PLLPPPAQFG AFQVTSVETP ALANALNSYA VGTPLDSQTS ALQTDDSLSP SSLDSVVVAE  180
QSIKNENYGN SCSANSLNCM GSDQLMRASA VLAGDYTRTP YIPVYASLSM GIINCYCQLV  240
DPEALRAELR HLKSLNVDGV IVDCWWGIVE AWTPQKYEWS GYRDLFGIIK EFRLKVQVVL  300
SFHGSGECES GDVLISLPRW VMEIAQENQD IFFTDREGRR NTECLSWGID KERVLRGRTG  360
IEVYFDFMRS FHMEFRSLSE EGLVSAIEIG LGASGELRYP SCTHKMGWRY PGIGEFQCYD  420
RYMQKNLRQS ALKRGHLFWA RGPDNAGYYN SRSHETGFFC DGGDYDSYYG RFFLNWYSGI  480
LVDHVDQVLS LATLAFDGAE IVVKLKIAGN LV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1q6g_A1e-8822150911298beta-amylase
1wds_A1e-8822150911298Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g02800.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN1793990.0FN179399.1 Hordeum vulgare subsp. vulgare partial mRNA for beta-amylase (BAM7 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233755.20.0beta-amylase 8 isoform X2
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A0Q3PUJ30.0A0A0Q3PUJ3_BRADI; Beta-amylase
STRINGBRADI3G02800.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.11e-173beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]