PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi3g02800.1.p | ||||||||
Common Name | BRADI_3g02800, LOC100832151 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | BES1 | ||||||||
Protein Properties | Length: 660aa MW: 74025.4 Da PI: 6.382 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 156.3 | 2.2e-48 | 50 | 193 | 4 | 144 |
DUF822 4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspessl 94 g++++++E+E++k+RER+RR i++ ++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r + +pl a+ g+++ +s+e++ Bradi3g02800.1.p 50 GEREREREKERTKLRERHRRSITSHMLAGLRQHGNFPLPARADMNDVLAALARAAGWTVQPDGTTFRSSPQPLlpPPAQFQGAFQVTSVETPA 142 678999******************************************************************99899999************9 PP DUF822 95 q.sslkssalaspvesysaspksssfpspssldsislasaasllpvlsvls 144 ++l+s+a+ +p++s+ + +++++++spsslds+ +a+++ + + Bradi3g02800.1.p 143 LaNALNSYAVGTPLDSQTSALQTDDSLSPSSLDSVVVAEQSIKNENYGNSC 193 9899*********************************99844333333333 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 3.9E-48 | 50 | 200 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene3D | G3DSA:3.20.20.80 | 1.6E-169 | 219 | 654 | IPR013781 | Glycoside hydrolase, catalytic domain |
SuperFamily | SSF51445 | 1.18E-162 | 219 | 652 | IPR017853 | Glycoside hydrolase superfamily |
Pfam | PF01373 | 3.8E-82 | 242 | 614 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.2E-51 | 257 | 271 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.2E-51 | 278 | 296 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.2E-51 | 300 | 321 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.2E-51 | 393 | 415 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.2E-51 | 466 | 485 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.2E-51 | 500 | 516 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.2E-51 | 517 | 528 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.2E-51 | 535 | 558 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.2E-51 | 573 | 595 | IPR001554 | Glycoside hydrolase, family 14 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048831 | Biological Process | regulation of shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 660 aa Download sequence Send to blast |
MSTKHPHAHP RDADPAASPP PAPPPPPSRR ARGGFASSAP APPATARRRG EREREREKER 60 TKLRERHRRS ITSHMLAGLR QHGNFPLPAR ADMNDVLAAL ARAAGWTVQP DGTTFRSSPQ 120 PLLPPPAQFQ GAFQVTSVET PALANALNSY AVGTPLDSQT SALQTDDSLS PSSLDSVVVA 180 EQSIKNENYG NSCSANSLNC MGSDQLMRAS AVLAGDYTRT PYIPVYASLS MGIINCYCQL 240 VDPEALRAEL RHLKSLNVDG VIVDCWWGIV EAWTPQKYEW SGYRDLFGII KEFRLKVQVV 300 LSFHGSGECE SGDVLISLPR WVMEIAQENQ DIFFTDREGR RNTECLSWGI DKERVLRGRT 360 GIEVYFDFMR SFHMEFRSLS EEGLVSAIEI GLGASGELRY PSCTHKMGWR YPGIGEFQCY 420 DRYMQKNLRQ SALKRGHLFW ARGPDNAGYY NSRSHETGFF CDGGDYDSYY GRFFLNWYSG 480 ILVDHVDQVL SLATLAFDGA EIVVKIPSIY WWYRTASHAA ELTAGFYNPT NRDGYSPVFR 540 ILKKHSVTLK LVCYGPEFTV QEIGEAFADP EGLTWQVMNA AWDHGLSLSV ESALPCLDGE 600 MYPQILEIAK PRNDPDRHHV SFFAYRQQPP FLLQRDVCFS ELETFVKCMH GEDTQNLID* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wdq_A | 1e-118 | 222 | 652 | 11 | 444 | Beta-amylase |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00543 | DAP | Transfer from AT5G45300 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi3g02800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FN179399 | 0.0 | FN179399.1 Hordeum vulgare subsp. vulgare partial mRNA for beta-amylase (BAM7 gene). |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014755446.1 | 0.0 | beta-amylase 8 isoform X1 | ||||
Swissprot | Q9FH80 | 0.0 | BAM8_ARATH; Beta-amylase 8 | ||||
TrEMBL | I1HWU7 | 0.0 | I1HWU7_BRADI; Beta-amylase | ||||
STRING | BRADI3G02800.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2141 | 36 | 63 | Representative plant | OGRP9765 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G45300.1 | 0.0 | beta-amylase 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi3g02800.1.p |
Entrez Gene | 100832151 |
Publications ? help Back to Top | |||
---|---|---|---|
|