PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g02800.1.p
Common NameBRADI_3g02800, LOC100832151
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family BES1
Protein Properties Length: 660aa    MW: 74025.4 Da    PI: 6.382
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g02800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822156.32.2e-48501934144
            DUF822   4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspessl 94 
                       g++++++E+E++k+RER+RR i++ ++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r + +pl    a+  g+++ +s+e++ 
  Bradi3g02800.1.p  50 GEREREREKERTKLRERHRRSITSHMLAGLRQHGNFPLPARADMNDVLAALARAAGWTVQPDGTTFRSSPQPLlpPPAQFQGAFQVTSVETPA 142
                       678999******************************************************************99899999************9 PP

            DUF822  95 q.sslkssalaspvesysaspksssfpspssldsislasaasllpvlsvls 144
                         ++l+s+a+ +p++s+ + +++++++spsslds+ +a+++       + +
  Bradi3g02800.1.p 143 LaNALNSYAVGTPLDSQTSALQTDDSLSPSSLDSVVVAEQSIKNENYGNSC 193
                       9899*********************************99844333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.9E-4850200IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene3DG3DSA:3.20.20.801.6E-169219654IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514451.18E-162219652IPR017853Glycoside hydrolase superfamily
PfamPF013733.8E-82242614IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-51257271IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-51278296IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-51300321IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-51393415IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-51466485IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-51500516IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-51517528IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-51535558IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-51573595IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MSTKHPHAHP RDADPAASPP PAPPPPPSRR ARGGFASSAP APPATARRRG EREREREKER  60
TKLRERHRRS ITSHMLAGLR QHGNFPLPAR ADMNDVLAAL ARAAGWTVQP DGTTFRSSPQ  120
PLLPPPAQFQ GAFQVTSVET PALANALNSY AVGTPLDSQT SALQTDDSLS PSSLDSVVVA  180
EQSIKNENYG NSCSANSLNC MGSDQLMRAS AVLAGDYTRT PYIPVYASLS MGIINCYCQL  240
VDPEALRAEL RHLKSLNVDG VIVDCWWGIV EAWTPQKYEW SGYRDLFGII KEFRLKVQVV  300
LSFHGSGECE SGDVLISLPR WVMEIAQENQ DIFFTDREGR RNTECLSWGI DKERVLRGRT  360
GIEVYFDFMR SFHMEFRSLS EEGLVSAIEI GLGASGELRY PSCTHKMGWR YPGIGEFQCY  420
DRYMQKNLRQ SALKRGHLFW ARGPDNAGYY NSRSHETGFF CDGGDYDSYY GRFFLNWYSG  480
ILVDHVDQVL SLATLAFDGA EIVVKIPSIY WWYRTASHAA ELTAGFYNPT NRDGYSPVFR  540
ILKKHSVTLK LVCYGPEFTV QEIGEAFADP EGLTWQVMNA AWDHGLSLSV ESALPCLDGE  600
MYPQILEIAK PRNDPDRHHV SFFAYRQQPP FLLQRDVCFS ELETFVKCMH GEDTQNLID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-11822265211444Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g02800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN1793990.0FN179399.1 Hordeum vulgare subsp. vulgare partial mRNA for beta-amylase (BAM7 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755446.10.0beta-amylase 8 isoform X1
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLI1HWU70.0I1HWU7_BRADI; Beta-amylase
STRINGBRADI3G02800.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Representative plantOGRP97651112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]