PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g01910.2.p

Common Name

BRADI_3g01910, LOC100844277

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 553aa MW: 58717 Da PI: 4.2682

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g01910.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.6e-13	290	333	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++Er+RR+++N+++ +Lr+l+P+ +K++ a+iL A++YI Lq Bradi3g01910.2.p 290 MAERKRRKKLNDRLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 333 79*******************7.....7*************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.5E-18	281	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.24E-14	282	344	No hit	No description
PROSITE profile	PS50888	15.91	283	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-16	289	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-16	290	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-10	290	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence Send to blast
MGGGEHQLEH HSIVSSAAAA AAAAVHGHGG GGGTVEAALR PLVGADGWDY CIYWRLSPDQ 60 RFLEMTGFCC SGEFEALGDL PSSIPLDSSS IGMHAQALLS NQPIWQSCSG DMAPQVQDTA 120 GGEKTRLLVP VAGGLVELFA SRYMAEEQEM AELVMAQCGG GHGWQLQQQQ PAMAAAEEEQ 180 FYAATSVASL NLFDGGGGGA GGDDQFLAAG AGEDDGGAAA WGVAAGTSSE AAHEQQQLYS 240 GGAAAAARAE SGSEGSELQG DDDDVDGGVQ RKDGGHGGGG GKRQQCKNLM AERKRRKKLN 300 DRLYKLRSLV PNITKMDRAS ILGDAIDYIV GLQKQVKDLQ DELEEEDNPN NPDVLTMDDH 360 PPPGLDNDEA SPPPPQKRAR APAADPEEEE EKGEQEEQEQ DMEPQVEVRQ VGGGGEEFFL 420 QVLCSHKPGR FVRIMDEIAA LGLQVTNVNV TSYNKLVLNV FRAVMRENEA AVPADRVRDS 480 LLEVTREMYG AGGVWPAAMA PLPAMEAPMM VMAAEAKLDG GGEAGEHHYQ LQQQQLLGGY 540 HQQQHLYYLG LD*

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence Send to blast

MGGGEHQLEH HSIVSSAAAA AAAAVHGHGG GGGTVEAALR PLVGADGWDY CIYWRLSPDQ  60
RFLEMTGFCC SGEFEALGDL PSSIPLDSSS IGMHAQALLS NQPIWQSCSG DMAPQVQDTA  120
GGEKTRLLVP VAGGLVELFA SRYMAEEQEM AELVMAQCGG GHGWQLQQQQ PAMAAAEEEQ  180
FYAATSVASL NLFDGGGGGA GGDDQFLAAG AGEDDGGAAA WGVAAGTSSE AAHEQQQLYS  240
GGAAAAARAE SGSEGSELQG DDDDVDGGVQ RKDGGHGGGG GKRQQCKNLM AERKRRKKLN  300
DRLYKLRSLV PNITKMDRAS ILGDAIDYIV GLQKQVKDLQ DELEEEDNPN NPDVLTMDDH  360
PPPGLDNDEA SPPPPQKRAR APAADPEEEE EKGEQEEQEQ DMEPQVEVRQ VGGGGEEFFL  420
QVLCSHKPGR FVRIMDEIAA LGLQVTNVNV TSYNKLVLNV FRAVMRENEA AVPADRVRDS  480
LLEVTREMYG AGGVWPAAMA PLPAMEAPMM VMAAEAKLDG GGEAGEHHYQ LQQQQLLGGY  540
HQQQHLYYLG LD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	291	298	ERKRRKKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269\|PubMed:17138695, ECO:0000269\|PubMed:19825565, ECO:0000269\|PubMed:23385589}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g01910.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK375074	2e-98	AK375074.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3084O15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014756384.1	0.0	transcription factor TDR
Refseq	XP_024317909.1	0.0	transcription factor TDR
Refseq	XP_024317910.1	0.0	transcription factor TDR
Refseq	XP_024317911.1	0.0	transcription factor TDR
Swissprot	Q6YUS3	1e-162	TDR_ORYSJ; Transcription factor TDR
TrEMBL	I1HWI3	0.0	I1HWI3_BRADI; Uncharacterized protein
STRING	BRADI3G01910.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	2e-19	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bradi3g01910.2.p
Entrez Gene	100844277

Publications ? help Back to Top
Endo M, et al. High temperatures cause male sterility in rice plants with transcriptional alterations during pollen development. Plant Cell Physiol., 2009. 50(11): p. 1911-22 [PMID:19808807] Xu J,Wu M,He C [Identification and functional analysis of Tdrxoo, the member of TonB-dependent-receptor family proteins in Xanthomonas oryzae pv. oryzae]. Wei Sheng Wu Xue Bao, 2010. 50(2): p. 155-61 [PMID:20387456] Liu Z,Bao W,Liang W,Yin J,Zhang D Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development. J Integr Plant Biol, 2010. 52(7): p. 670-8 [PMID:20590996] Zhang D, et al. OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice. Plant Physiol., 2010. 154(1): p. 149-62 [PMID:20610705] Senapati PK,Behera S Experimental investigation on an entrained flow type biomass gasification system using coconut coir dust as powdery biomass feedstock. Bioresour. Technol., 2012. 117: p. 99-106 [PMID:22613886] Zhang SR,Dong DM,Zheng WG,Zhao XD,Wang JH [Laser-induced fluorescence spectroscopy characterization of farmland soil moisture content]. Guang Pu Xue Yu Guang Pu Fen Xi, 2012. 32(10): p. 2623-7 [PMID:23285852] Li L, et al. An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development. Planta, 2015. 241(1): p. 157-66 [PMID:25236969] Yi J, et al. Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration. Plant Physiol., 2016. 170(3): p. 1611-23 [PMID:26697896]