PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g01483.1.p | ||||||||
Common Name | BRADI_3g01487 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 379aa MW: 43790.7 Da PI: 7.4902 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.9 | 4.1e-06 | 71 | 92 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg sF + +Lk+H+++H Bradi3g01483.1.p 71 TCEECGASFQKPAHLKQHMQSH 92 6*******************99 PP | |||||||
2 | zf-C2H2 | 20.9 | 9.5e-07 | 99 | 122 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp dC+ s+ rk++L+rH+ +H Bradi3g01483.1.p 99 VCPleDCPFSYIRKDHLNRHMLKH 122 69999*****************99 PP | |||||||
3 | zf-C2H2 | 17 | 1.7e-05 | 127 | 152 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp C+k+Fs k n +rH + H Bradi3g01483.1.p 127 FTCPmeGCDKRFSIKANVQRHVKEmH 152 89********************9988 PP | |||||||
4 | zf-C2H2 | 17.9 | 8.3e-06 | 164 | 188 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ C+k F+ s Lk+H +H Bradi3g01483.1.p 164 FVCKeeGCNKAFKYASKLKKHEESH 188 89*******************9988 PP | |||||||
5 | zf-C2H2 | 18 | 7.8e-06 | 255 | 279 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ dC sFs+ksnL++H++ H Bradi3g01483.1.p 255 KCTfeDCECSFSNKSNLTKHMKAcH 279 79999*****************955 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 33 | 24 | 46 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 0.0088 | 70 | 92 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.757 | 70 | 97 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.3E-6 | 71 | 90 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 72 | 92 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.94E-10 | 82 | 124 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-9 | 91 | 124 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.017 | 98 | 122 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 100 | 122 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.63E-7 | 125 | 153 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.4E-6 | 125 | 153 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 5.0E-4 | 127 | 152 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.845 | 127 | 157 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 129 | 152 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.2E-7 | 160 | 188 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.596 | 164 | 188 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0042 | 164 | 188 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 166 | 188 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 7 | 196 | 221 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 198 | 221 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 13 | 224 | 245 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 235 | 276 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.05E-7 | 236 | 295 | No hit | No description |
SMART | SM00355 | 0.0081 | 254 | 279 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.489 | 254 | 284 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 256 | 279 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.6E-4 | 278 | 307 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.891 | 285 | 311 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.3 | 285 | 311 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 287 | 311 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008097 | Molecular Function | 5S rRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0080084 | Molecular Function | 5S rDNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MSSGDEISGD EMVEETHCRD IRRYKCEFCT VIRSKKCLIR AHMVAHHKDE LEISEIYNSD 60 GEKIIQEDEP TCEECGASFQ KPAHLKQHMQ SHSKERSSVC PLEDCPFSYI RKDHLNRHML 120 KHEGKLFTCP MEGCDKRFSI KANVQRHVKE MHEVENDTKS NQQFVCKEEG CNKAFKYASK 180 LKKHEESHVK LDYVEVVCCE EGCMKTFTNV ECLRAHNQSF HQYIQCDICG EKHLKKNIKR 240 HLRAHDTAVP TERIKCTFED CECSFSNKSN LTKHMKACHD QIRPFACRFA GCGKEFTYKH 300 VRDNHEKSSA HVYVEGDFAE MAEQLRSRPR GGRKRTAVTV ETLTRKRVTM PGEAVSLEDG 360 TEYMRWLLSG GDESRPAE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tf6_A | 3e-18 | 74 | 216 | 19 | 155 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
1tf6_D | 3e-18 | 74 | 216 | 19 | 155 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00229 | DAP | Transfer from AT1G72050 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g01483.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003573264.1 | 0.0 | transcription factor IIIA isoform X2 | ||||
Refseq | XP_010233704.1 | 0.0 | transcription factor IIIA isoform X1 | ||||
Swissprot | Q84MZ4 | 1e-117 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | A0A2K2CUM0 | 0.0 | A0A2K2CUM0_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G01487.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2382 | 38 | 82 | Representative plant | OGRP2981 | 16 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 1e-120 | transcription factor IIIA |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g01483.1.p |