PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g01377.1.p | ||||||||
Common Name | BRADI_3g01377, LOC100826254 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 292aa MW: 30742.1 Da PI: 7.5754 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l d++ ++G g+W++++++ g+ R +k+c++rw +yl Bradi3g01377.1.p 15 KGLWSPEEDQRLRDYILKHGLGCWSAVPAKAGLQRNGKSCRLRWINYL 62 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.9 | 3.6e-16 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE++ +++ ++lG++ W+ Ia +++ gRt++++k++w++yl Bradi3g01377.1.p 68 RGMFSQEEEDVVINLQAKLGNK-WSQIAMHLP-GRTDNEVKNYWNSYL 113 788*******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.46 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.24E-29 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-11 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-14 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-22 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.17E-10 | 18 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.295 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-14 | 68 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-25 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.45E-12 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MGCRSCDKPK MNYRKGLWSP EEDQRLRDYI LKHGLGCWSA VPAKAGLQRN GKSCRLRWIN 60 YLRPGLKRGM FSQEEEDVVI NLQAKLGNKW SQIAMHLPGR TDNEVKNYWN SYLKKRVMSS 120 SNSNSRNNPE LLTSMSATTE LIINNGGGSS ATSYDDHDGG NVSAGSHGIS AAPPAAAEPL 180 FDQQQQAAKS FVFADWMPPA AAPPAAAAGP ESYSMSGAHW PASTASSSGT ATPSHAAFLG 240 DQISGGSYAG GAGVSHGGIG PGAGGGGGYF DLLNMGDIYG GFSTTNDDLL F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-25 | 9 | 117 | 23 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g01377.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368664 | 1e-151 | AK368664.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2077L03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003573183.1 | 0.0 | myb-related protein 305 | ||||
TrEMBL | I1HWB4 | 0.0 | I1HWB4_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G01377.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12296 | 27 | 35 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 3e-54 | myb domain protein 19 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g01377.1.p |
Entrez Gene | 100826254 |