PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g01340.7.p
Common NameBRADI_3g01340, LOC100842465
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 1169aa    MW: 130200 Da    PI: 9.1682
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g01340.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.33e-074580340
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                       W+++E e+++ a +++G++ Wk++a  +   Rt  ++
  Bradi3g01340.7.p 45 QWSKDELERFYGAYRKYGKD-WKKVAGAVH-DRTSDMV 80
                      6*****************99.******999.9997665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-93789IPR009057Homeodomain-like
PfamPF002491.3E-54584IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-44584IPR009057Homeodomain-like
CDDcd001670.002974687No hitNo description
SMARTSM011355.0E-57655756IPR033471DIRP domain
PfamPF065841.5E-32655755IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1169 aa     Download sequence    Send to blast
MSSTRKVRNV NKRYAKINED WQDKEATTVH KSKVRKKKLS DLGSQWSKDE LERFYGAYRK  60
YGKDWKKVAG AVHDRTSDMV EALYNMNRAY LSLPEGTATA AGLIAMMTDH YNILDGSNSD  120
HESNESPKTS RKPQKRGRAK LQSVSKTSDT RYADLLQSQP SSSNYGCLSL LKKKRSGDLF  180
VGNRPRAVGK RTPRVPVASM YHRDDRIGPS NRQSKPDANN GDDEGARVAA LALAEVGQRG  240
SSPQISQTPG RSSDRLFLSP VKSIDRKNAD SDIGSSKLHG FQVDADYPEG SLGSREAETG  300
DYPKDASYFM NNGGSASGKS KQKIKKSQRR KKKAAQKSDD QFEDDREACS GTEEGHSARK  360
AKDESEVDAV GTSWPSNKSN KRSRQLFFDD ESSALDALYT LADLSVNILQ PSSIAESESS  420
AHIKDESRDN DFDDKPSVPA ALSLSEKKEK SRKMKKVKRQ SEIAGNEMVT RKKARLSKDP  480
HHDEGAISEV KQQDCNVQKE KKKRKSATGK IPKDEKKDEK NTMNDIEKTE VSAEEGKVSS  540
NKGRHARVSP VSKQNKSKAQ ESSPAHADSG KEAMDIVETT QNATTQQSDL TSKARSRRKL  600
GILKALAPEC KPAEGTDGSH DNVSYPVNNV IDLKDKLSHC LSSRFLRRWC TYEWFYSAID  660
YPWFAKSEFV EYLNHVKLGH VPRLTRVEWG VIRSSLGKPR RLSKQFLHEE REKLFKYRHS  720
VRQHYDELRS GVREGLPTDL ARPLAVGQRV IACHPKTGEL HEGSVLTVDY HRCRVNFDRP  780
ELGVEFVMDI DCMPLHPLEN FPESLRRQNI VNKYYSSFSE VKFEDRSREY GGGGVARFAS  840
NGDTFDTHAK ATVNEVTGAA QQAMYSQPCT LSQIQEREAD IKALAELSRS LDKKEALLVE  900
LRHMNEEVSA KQKDGETISE LEHFRKQYAM VLVQLRDSND HVASALLSLR QRNTFHEHPL  960
QSYPKSTDNG GALNGKLEPF NHFGYINQES GSQVMEIIET SRCRAKTMVD VAIQAMCKVS  1020
EGENAFAKIG EALDNLSIRG TGSGSSILGI RRIPPDSGQA NSTCQDNSTS GRFDPATTNT  1080
SSPRLSNGYD SEAQFPSELI SSCVATVLMI QNCTEKQCHP AEVAHILDSA LSRLQPCSSQ  1140
NVPIFREIEM CMGIIKNQML ALIPTPSG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320331KQKIKKSQRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g01340.7.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233693.10.0protein ALWAYS EARLY 2 isoform X1
RefseqXP_010233694.10.0protein ALWAYS EARLY 2 isoform X1
TrEMBLI1HWA90.0I1HWA9_BRADI; Uncharacterized protein
STRINGBRADI3G01340.40.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding