PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g01340.5.p

Common Name

BRADI_3g01340, LOC100842465

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

MYB_related

Protein Properties

Length: 1165aa MW: 129725 Da PI: 9.2218

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g01340.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.3	3e-07	45	80	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+++E e+++ a +++G++ Wk++a + Rt ++ Bradi3g01340.5.p 45 QWSKDELERFYGAYRKYGKD-WKKVAGAVH-DRTSDMV 80 6***************99.****999.9997665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.79E-9	37	89	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-4	45	84	IPR009057	Homeodomain-like
Pfam	PF00249	1.3E-5	45	84	IPR001005	SANT/Myb domain
CDD	cd00167	0.00301	46	87	No hit	No description
Pfam	PF06584	1.5E-32	651	751	IPR033471	DIRP domain
SMART	SM01135	5.0E-57	651	752	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1165 aa Download sequence Send to blast
MSSTRKVRNV NKRYAKINED WQDKEATTVH KSKVRKKKLS DLGSQWSKDE LERFYGAYRK 60 YGKDWKKVAG AVHDRTSDMV EALYNMNRAY LSLPEGTATA AGLIAMMTDH YNILDGSNSD 120 HESNESPKTS RKPQKRGRAK LQSVSKTSDT RYADLLQSQP SSSNYGCLSL LKKKRSGGNR 180 PRAVGKRTPR VPVASMYHRD DRIGPSNRQS KPDANNGDDE GARVAALALA EVGQRGSSPQ 240 ISQTPGRSSD RLFLSPVKSI DRKNADSDIG SSKLHGFQVD ADYPEGSLGS REAETGDYPK 300 DASYFMNNGG SASGKSKQKI KKSQRRKKKA AQKSDDQFED DREACSGTEE GHSARKAKDE 360 SEVDAVGTSW PSNKSNKRSR QLFFDDESSA LDALYTLADL SVNILQPSSI AESESSAHIK 420 DESRDNDFDD KPSVPAALSL SEKKEKSRKM KKVKRQSEIA GNEMVTRKKA RLSKDPHHDE 480 GAISEVKQQD CNVQKEKKKR KSATGKIPKD EKKDEKNTMN DIEKTEVSAE EGKVSSNKGR 540 HARVSPVSKQ NKSKAQESSP AHADSGKEAM DIVETTQNAT TQQSDLTSKA RSRRKLGILK 600 ALAPECKPAE GTDGSHDNVS YPVNNVIDLK DKLSHCLSSR FLRRWCTYEW FYSAIDYPWF 660 AKSEFVEYLN HVKLGHVPRL TRVEWGVIRS SLGKPRRLSK QFLHEEREKL FKYRHSVRQH 720 YDELRSGVRE GLPTDLARPL AVGQRVIACH PKTGELHEGS VLTVDYHRCR VNFDRPELGV 780 EFVMDIDCMP LHPLENFPES LRRQNIVNKY YSSFSEVKFE DRSREYGGGG VARFASNGDT 840 FDTHAKATVN EVTGAAQQAM YSQPCTLSQI QEREADIKAL AELSRSLDKK EALLVELRHM 900 NEEVSAKQKD GETISELEHF RKQYAMVLVQ LRDSNDHVAS ALLSLRQRNT FHEHPLQSYP 960 KSTDNGGALN GKLEPFNHFG YINQESGSQV MEIIETSRCR AKTMVDVAIQ AMCKVSEGEN 1020 AFAKIGEALD NLSIRGTGSG SSILGIRRIP PDSGQANSTC QDNSTSGRFD PATTNTSSPR 1080 LSNGYDSEAQ FPSELISSCV ATVLMIQNCT EKQCHPAEVA HILDSALSRL QPCSSQNVPI 1140 FREIEMCMGI IKNQMLALIP TPSG*

Sequence ? help Back to Top

Protein Sequence Length: 1165 aa Download sequence Send to blast

MSSTRKVRNV NKRYAKINED WQDKEATTVH KSKVRKKKLS DLGSQWSKDE LERFYGAYRK  60
YGKDWKKVAG AVHDRTSDMV EALYNMNRAY LSLPEGTATA AGLIAMMTDH YNILDGSNSD  120
HESNESPKTS RKPQKRGRAK LQSVSKTSDT RYADLLQSQP SSSNYGCLSL LKKKRSGGNR  180
PRAVGKRTPR VPVASMYHRD DRIGPSNRQS KPDANNGDDE GARVAALALA EVGQRGSSPQ  240
ISQTPGRSSD RLFLSPVKSI DRKNADSDIG SSKLHGFQVD ADYPEGSLGS REAETGDYPK  300
DASYFMNNGG SASGKSKQKI KKSQRRKKKA AQKSDDQFED DREACSGTEE GHSARKAKDE  360
SEVDAVGTSW PSNKSNKRSR QLFFDDESSA LDALYTLADL SVNILQPSSI AESESSAHIK  420
DESRDNDFDD KPSVPAALSL SEKKEKSRKM KKVKRQSEIA GNEMVTRKKA RLSKDPHHDE  480
GAISEVKQQD CNVQKEKKKR KSATGKIPKD EKKDEKNTMN DIEKTEVSAE EGKVSSNKGR  540
HARVSPVSKQ NKSKAQESSP AHADSGKEAM DIVETTQNAT TQQSDLTSKA RSRRKLGILK  600
ALAPECKPAE GTDGSHDNVS YPVNNVIDLK DKLSHCLSSR FLRRWCTYEW FYSAIDYPWF  660
AKSEFVEYLN HVKLGHVPRL TRVEWGVIRS SLGKPRRLSK QFLHEEREKL FKYRHSVRQH  720
YDELRSGVRE GLPTDLARPL AVGQRVIACH PKTGELHEGS VLTVDYHRCR VNFDRPELGV  780
EFVMDIDCMP LHPLENFPES LRRQNIVNKY YSSFSEVKFE DRSREYGGGG VARFASNGDT  840
FDTHAKATVN EVTGAAQQAM YSQPCTLSQI QEREADIKAL AELSRSLDKK EALLVELRHM  900
NEEVSAKQKD GETISELEHF RKQYAMVLVQ LRDSNDHVAS ALLSLRQRNT FHEHPLQSYP  960
KSTDNGGALN GKLEPFNHFG YINQESGSQV MEIIETSRCR AKTMVDVAIQ AMCKVSEGEN  1020
AFAKIGEALD NLSIRGTGSG SSILGIRRIP PDSGQANSTC QDNSTSGRFD PATTNTSSPR  1080
LSNGYDSEAQ FPSELISSCV ATVLMIQNCT EKQCHPAEVA HILDSALSRL QPCSSQNVPI  1140
FREIEMCMGI IKNQMLALIP TPSG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	316	327	KQKIKKSQRRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g01340.5.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010233695.1	0.0	protein ALWAYS EARLY 2 isoform X2
TrEMBL	A0A0Q3J3F4	0.0	A0A0Q3J3F4_BRADI; Uncharacterized protein
STRING	BRADI3G01340.4	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Bradi3g01340.5.p
Entrez Gene	100842465