PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g00550.2.p
Common NameBRADI_3g00550, LOC104583397
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 368aa    MW: 40067.6 Da    PI: 9.5391
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g00550.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.5e-32180233255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Bradi3g00550.2.p 180 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 233
                       9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-15177234IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-28178234IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-23180234IPR006447Myb domain, plants
PfamPF002492.4E-7181232IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MELFPRQPDL ARPTSSSSSA SFPPAPAPAP TTAWLRPLDT TTTAGNNMDQ FGHLGFWQAP  60
GSAKDGDLRT PSARTAAPPS NHFLSSATAG SYKQQQHVNS ISHGGCYSNN HHYYERMNAL  120
LKPIRGVPIY HHHPFQLQHQ HQQQQQQKHM VMGSRSINNG GGGFLSSSRF PAGRRSLRAP  180
RMRWTTTLHA RFVHAVELLG GHERATPKSV LELMDVKDLT LAHVKSHLQM YRTIKSTDKP  240
MVSSGQLEGF DNGSAGEISD ESLPETLGTR RIISTDQNGT SANSHSSNTY NGLWSNSSSR  300
VGCPELGSNT TEIGKLRHKE EAAAPSKSIE ISAEMNASCI SYQTSSPPAQ PNLEFTLGIR  360
TTLHTID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-16181235357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-16181235357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-16181235357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-16181235357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g00550.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233652.10.0probable transcription factor KAN2 isoform X1
SwissprotQ9C6162e-48KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A0Q3EZE00.0A0A0Q3EZE0_BRADI; Uncharacterized protein
STRINGBRADI3G00550.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47213665
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.12e-50G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]