PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g00300.1.p | ||||||||
Common Name | BRADI_3g00300, LOC100834723 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bZIP | ||||||||
Protein Properties | Length: 191aa MW: 20703.2 Da PI: 8.9604 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 42.1 | 1.9e-13 | 118 | 167 | 5 | 54 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +r+rr++kNRe+A rsR+RK+a++ eLe + ++L N++L k+ + l+ Bradi3g00300.1.p 118 RRQRRMIKNRESAARSRARKQAYTNELELELAQLRRDNQMLLKRHQDLNA 167 69****************************************99888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.5E-9 | 114 | 178 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.519 | 116 | 169 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.1E-13 | 118 | 170 | No hit | No description |
SuperFamily | SSF57959 | 1.38E-10 | 118 | 169 | No hit | No description |
Pfam | PF00170 | 1.0E-11 | 118 | 168 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 3.44E-21 | 118 | 170 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 121 | 136 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MEEEVIWKDM SSLSSTPVAG LQQHYYLSSP ARSCFHRPPP PTALALSSTL EFTYLGCAAA 60 TASNSSSGDD AQLMPPAADL DDILISFAAA SNNHTGAGSA NNNKRSTSAI TAGGGCERRQ 120 RRMIKNRESA ARSRARKQAY TNELELELAQ LRRDNQMLLK RHQDLNARLA MEAQVPDRST 180 LQRCRSAPAP * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g00300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375836 | 2e-33 | AK375836.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3107H21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003573205.1 | 1e-138 | protein FD | ||||
TrEMBL | I1HVY4 | 1e-137 | I1HVY4_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G00300.1 | 1e-138 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14602 | 10 | 20 | Representative plant | OGRP17801 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 1e-22 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g00300.1.p |
Entrez Gene | 100834723 |