PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g62660.1.p | ||||||||
Common Name | BRADI_2g62660, LOC100846492 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GATA | ||||||||
Protein Properties | Length: 157aa MW: 17140.7 Da PI: 9.974 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.3 | 1.2e-19 | 23 | 57 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+ttkTplWR gp g+k+LCnaCG++yrk+++ Bradi2g62660.1.p 23 CTDCNTTKTPLWRGGPTGPKSLCNACGIRYRKRRR 57 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 6.3E-18 | 17 | 72 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.0E-16 | 17 | 58 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 13.257 | 17 | 53 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.14E-13 | 17 | 57 | No hit | No description |
CDD | cd00202 | 5.03E-15 | 22 | 58 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 23 | 48 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.1E-17 | 23 | 57 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MEPDMVVVAD PDECTASGEP KACTDCNTTK TPLWRGGPTG PKSLCNACGI RYRKRRRQAM 60 GLDPEVKKKP KKEDAAAANT NTKAASAGAA DQEGKDKDKE KKEPRTHTVE LHMVGFAKDV 120 VLKQRRRMRR RKPSCQGEEE RAAILLMALS SGVIYA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 52 | 56 | RKRRR |
2 | 123 | 129 | QRRRMRR |
3 | 124 | 131 | RRRMRRRK |
4 | 125 | 130 | RRMRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g62660.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP098858 | 3e-57 | FP098858.1 Phyllostachys edulis cDNA clone: bphylf052j14, full insert sequence. | |||
GenBank | FP100003 | 3e-57 | FP100003.1 Phyllostachys edulis cDNA clone: bphyst005b14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003565196.1 | 1e-112 | GATA transcription factor 16 | ||||
TrEMBL | I1HVV1 | 1e-110 | I1HVV1_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G62660.1 | 1e-111 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2418 | 38 | 92 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 2e-19 | GATA transcription factor 15 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g62660.1.p |
Entrez Gene | 100846492 |