PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g62510.9.p
Common NameBRADI_2g62510, LOC100844769
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 173aa    MW: 19446.3 Da    PI: 5.255
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g62510.9.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.4e-17242547
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      +++E+ l v++++++G++ W++Iar m+ gRt++++k++w+++
  Bradi2g62510.9.p  2 SPDEERLVVELHAKWGNR-WSRIARSMP-GRTDNEIKNYWRTH 42
                      89****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.8E-11145IPR001005SANT/Myb domain
CDDcd001672.16E-11142No hitNo description
PROSITE profilePS5129423.153147IPR017930Myb domain
SuperFamilySSF466891.09E-12257IPR009057Homeodomain-like
PfamPF002496.4E-15242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-19244IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MSPDEERLVV ELHAKWGNRW SRIARSMPGR TDNEIKNYWR THTRKLKHKH RHHQEEEEST  60
KVATSASAST STSAATTSPS STSSSSDVEV VQEAASKEDE QQQLLCAGTM DDGQLLWNDD  120
GIDAYASWSG ATSSMMMVPS SPVWPWDDHY CCPTDSLWGH DEVFEYKKML HS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g62510.9.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703064e-44HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
GenBankJF2889354e-44JF288935.1 Triticum aestivum MYB13-2 mRNA, complete cds, alternatively spliced.
GenBankJF9519394e-44JF951939.2 Triticum aestivum clone TaMYB56 MYB-related protein mRNA, complete cds.
GenBankJN1913464e-44JN191346.1 Triticum aestivum MYB13-2 mRNA, complete cds.
GenBankJN1913474e-44JN191347.1 Triticum aestivum MYB13-3 mRNA, complete cds.
GenBankJX1836174e-44JX183617.1 Triticum aestivum MYB protein (MYB56) mRNA, MYB56-B allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232888.11e-125transcription factor MYB59 isoform X2
TrEMBLA0A0Q3N5301e-124A0A0Q3N530_BRADI; Uncharacterized protein
TrEMBLI1HVT51e-123I1HVT5_BRADI; Uncharacterized protein
STRINGBRADI2G62510.11e-124(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.17e-20myb domain protein 59