PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g62510.7.p | ||||||||
Common Name | BRADI_2g62510, LOC100844769 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 173aa MW: 19446.3 Da PI: 5.255 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.1 | 7.4e-17 | 2 | 42 | 5 | 47 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++E+ l v++++++G++ W++Iar m+ gRt++++k++w+++ Bradi2g62510.7.p 2 SPDEERLVVELHAKWGNR-WSRIARSMP-GRTDNEIKNYWRTH 42 89****************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 6.8E-11 | 1 | 45 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.16E-11 | 1 | 42 | No hit | No description |
PROSITE profile | PS51294 | 23.153 | 1 | 47 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-12 | 2 | 57 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.4E-15 | 2 | 42 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-19 | 2 | 44 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MSPDEERLVV ELHAKWGNRW SRIARSMPGR TDNEIKNYWR THTRKLKHKH RHHQEEEEST 60 KVATSASAST STSAATTSPS STSSSSDVEV VQEAASKEDE QQQLLCAGTM DDGQLLWNDD 120 GIDAYASWSG ATSSMMMVPS SPVWPWDDHY CCPTDSLWGH DEVFEYKKML HS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g62510.7.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 4e-44 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. | |||
GenBank | JF288935 | 4e-44 | JF288935.1 Triticum aestivum MYB13-2 mRNA, complete cds, alternatively spliced. | |||
GenBank | JF951939 | 4e-44 | JF951939.2 Triticum aestivum clone TaMYB56 MYB-related protein mRNA, complete cds. | |||
GenBank | JN191346 | 4e-44 | JN191346.1 Triticum aestivum MYB13-2 mRNA, complete cds. | |||
GenBank | JN191347 | 4e-44 | JN191347.1 Triticum aestivum MYB13-3 mRNA, complete cds. | |||
GenBank | JX183617 | 4e-44 | JX183617.1 Triticum aestivum MYB protein (MYB56) mRNA, MYB56-B allele, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010232888.1 | 1e-125 | transcription factor MYB59 isoform X2 | ||||
TrEMBL | A0A0Q3N530 | 1e-124 | A0A0Q3N530_BRADI; Uncharacterized protein | ||||
TrEMBL | I1HVT5 | 1e-123 | I1HVT5_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G62510.1 | 1e-124 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.1 | 7e-20 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g62510.7.p |
Entrez Gene | 100844769 |