PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g62510.4.p | ||||||||
Common Name | BRADI_2g62510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 215aa MW: 24286 Da PI: 6.5786 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.7 | 2.7e-18 | 40 | 84 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++++E+ l v++++++G++ W++Iar m+ gRt++++k++w+++ Bradi2g62510.4.p 40 RGRMSPDEERLVVELHAKWGNR-WSRIARSMP-GRTDNEIKNYWRTH 84 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.391 | 14 | 34 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.63E-20 | 20 | 97 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.3E-9 | 20 | 47 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.454 | 35 | 89 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-16 | 39 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-16 | 40 | 84 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.17E-11 | 42 | 84 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-19 | 48 | 86 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MHLCCAAVLY FATSEYAGLN RSGKSCRLRW VNYLHPDLKR GRMSPDEERL VVELHAKWGN 60 RWSRIARSMP GRTDNEIKNY WRTHTRKLKH KHRHHQEEEE STKVATSASA STSTSAATTS 120 PSSTSSSSDV EVVQEAASKE DEQQQLLCAG TMDDGQLLWN DDGIDAYASW SGATSSMMMV 180 PSSPVWPWDD HYCCPTDSLW GHDEVFEYKK MLHS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-16 | 21 | 87 | 40 | 106 | B-MYB |
1gv2_A | 3e-16 | 21 | 87 | 37 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-16 | 21 | 87 | 37 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 4e-16 | 21 | 87 | 37 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g62510.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951939 | 7e-71 | JF951939.2 Triticum aestivum clone TaMYB56 MYB-related protein mRNA, complete cds. | |||
GenBank | JN191347 | 7e-71 | JN191347.1 Triticum aestivum MYB13-3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024314946.1 | 1e-160 | transcription factor MYB48 isoform X1 | ||||
TrEMBL | A0A0Q3J1I0 | 1e-158 | A0A0Q3J1I0_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G62510.1 | 1e-145 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 1e-37 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g62510.4.p |