PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g62510.2.p | ||||||||
Common Name | BRADI_2g62510, LOC100844769 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 265aa MW: 30135.9 Da PI: 8.7151 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.9 | 1.3e-14 | 37 | 84 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv v+++G ++W+ a+ g++R++k+c++rw +yl Bradi2g62510.2.p 37 KGPWTEQEDMKLVWFVRLFGERRWDFLAKVSGLNRSGKSCRLRWVNYL 84 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 57.2 | 3.8e-18 | 90 | 134 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++++E+ l v++++++G++ W++Iar m+ gRt++++k++w+++ Bradi2g62510.2.p 90 RGRMSPDEERLVVELHAKWGNR-WSRIARSMP-GRTDNEIKNYWRTH 134 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.061 | 32 | 84 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-28 | 36 | 131 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-13 | 36 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-13 | 37 | 84 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-19 | 38 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.95E-8 | 39 | 84 | No hit | No description |
PROSITE profile | PS51294 | 25.454 | 85 | 139 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-16 | 89 | 137 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-16 | 90 | 134 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.12E-10 | 92 | 134 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-23 | 92 | 137 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MKQTSKQQLG KTKKMAIEAG KKKKEECLSA AAGVVRKGPW TEQEDMKLVW FVRLFGERRW 60 DFLAKVSGLN RSGKSCRLRW VNYLHPDLKR GRMSPDEERL VVELHAKWGN RWSRIARSMP 120 GRTDNEIKNY WRTHTRKLKH KHRHHQEEEE STKVATSASA STSTSAATTS PSSTSSSSDV 180 EVVQEAASKE DEQQQLLCAG TMDDGQLLWN DDGIDAYASW SGATSSMMMV PSSPVWPWDD 240 HYCCPTDSLW GHDEVFEYKK MLHS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 37 | 137 | 7 | 106 | B-MYB |
1gv2_A | 1e-25 | 37 | 137 | 4 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 4e-25 | 37 | 137 | 58 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-25 | 37 | 137 | 58 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-25 | 37 | 137 | 4 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 1e-25 | 37 | 137 | 4 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g62510.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951939 | 1e-112 | JF951939.2 Triticum aestivum clone TaMYB56 MYB-related protein mRNA, complete cds. | |||
GenBank | JN191347 | 1e-112 | JN191347.1 Triticum aestivum MYB13-3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010232888.1 | 0.0 | transcription factor MYB59 isoform X2 | ||||
TrEMBL | I1HVT5 | 0.0 | I1HVT5_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G62510.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 5e-57 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g62510.2.p |
Entrez Gene | 100844769 |