PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g62131.1.p
Common NameBRADI_2g62131, LOC100839602
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 397aa    MW: 42291.5 Da    PI: 4.7656
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g62131.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.71.8e-31141197258
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                       dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers+e+p+++ +tYeg H h
  Bradi2g62131.1.p 141 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERSTEEPDTLLVTYEGLHLH 197
                       8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-28134198IPR003657WRKY domain
PROSITE profilePS5081127.06135200IPR003657WRKY domain
SuperFamilySSF1182904.32E-26138198IPR003657WRKY domain
SMARTSM007748.8E-36140199IPR003657WRKY domain
PfamPF031066.9E-25141197IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEEYWQDDFG FGQELMMREL LDEAATAAPS PVDAGAAAGY SSYSSKDDEE EEEEYCRSAA  60
RRRPEQQSSM VNKLISAVYS GPTLSDIESA LSFSGAGAAD PLADGRKYSS TPVVFSPEKM  120
MSKMENKYTM KIKTCGNGLA DDGYKWRKYG QKSIKNSPNP RSYYRCTNPR CNAKKQVERS  180
TEEPDTLLVT YEGLHLHYTY SHFLQAHHHP AQPQPQAQAQ AQTAAGSKKP KLHSAADITP  240
ATAATTTSPP PSMASAATVP ATAAAAADGE NVDGRFMRWP AAVVPNSDDS SYNFFDGSGD  300
IVGDAEEDHQ GRMTSIINGG SGLLEDMVPL LVRRPSSGND DSAATTTTTT NSSSTSTLGS  360
PAGAGAWAAP SPSTSSSVSW NPASPYIDMA ILSNIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-201391971674Probable WRKY transcription factor 4
2lex_A6e-201391971674Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g62131.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754265.10.0WRKY transcription factor SUSIBA2
TrEMBLA0A0Q3N4Y60.0A0A0Q3N4Y6_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75253551
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.12e-44WRKY DNA-binding protein 49