PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g62067.1.p | ||||||||
Common Name | LOC100834697 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | G2-like | ||||||||
Protein Properties | Length: 257aa MW: 26734.7 Da PI: 8.0761 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 92.5 | 3.4e-29 | 114 | 167 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +pr++W+p+LH+rFv++v++L G++ A+Pkti++lm+v+gLt+e+v+SHLQkYRl Bradi2g62067.1.p 114 RPRMVWNPQLHKRFVDVVAHL-GIKSAVPKTIMQLMNVEGLTRENVASHLQKYRL 167 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.407 | 111 | 170 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.94E-18 | 111 | 171 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.7E-30 | 111 | 172 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-23 | 115 | 167 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.5E-7 | 116 | 166 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGEEAGGGGG GEYARVSEWE TGLPGSDELT PLSQPLVPPG LAAAFRIPPE PGRTLLDVHR 60 ASSATVSRLR SSSSSSSGGG GSFPTFPSGH GGAASDTGAD SAAAASELEK TSKRPRMVWN 120 PQLHKRFVDV VAHLGIKSAV PKTIMQLMNV EGLTRENVAS HLQKYRLYVK RMQGLSNEGP 180 SPSDHIFAST PVPPSLREPQ VPSAAMAPMY HHHPMGGGGG GMTGGYYQPQ QQHGGHAVYN 240 GYGGGGGYSQ YHHGDQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 4e-34 | 114 | 170 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is essential for the generation of the circadian clock oscillation. Binds to specific sites on CCA1 promoter leading to CCA1 activation (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00014 | PBM | Transfer from AT3G46640 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g62067.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16164597}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357505 | 1e-110 | AK357505.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1055A13. | |||
GenBank | KC668259 | 1e-110 | KC668259.1 Hordeum vulgare haplotype 1 LUX (LUX) gene, complete cds. | |||
GenBank | KC668262 | 1e-110 | KC668262.1 Hordeum vulgare haplotype 4 LUX (LUX) gene, complete cds. | |||
GenBank | KC668266 | 1e-110 | KC668266.1 Hordeum vulgare haplotype 8 LUX (LUX) gene, complete cds. | |||
GenBank | KC668267 | 1e-110 | KC668267.1 Hordeum vulgare haplotype 9 LUX (LUX) gene, complete cds. | |||
GenBank | KC668268 | 1e-110 | KC668268.1 Hordeum vulgare haplotype 10 LUX (LUX) gene, complete cds. | |||
GenBank | KC668269 | 1e-110 | KC668269.1 Hordeum vulgare haplotype 11 LUX (LUX) gene, complete cds. | |||
GenBank | KC668272 | 1e-110 | KC668272.1 Hordeum vulgare haplotype 14 LUX (LUX) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003565161.1 | 0.0 | transcription factor PCL1 | ||||
Swissprot | Q94DH3 | 8e-85 | PCL1_ORYSJ; Transcription factor PCL1 | ||||
TrEMBL | I1HVM5 | 0.0 | I1HVM5_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G62067.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1620 | 34 | 105 | Representative plant | OGRP1157 | 17 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46640.3 | 1e-49 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g62067.1.p |
Entrez Gene | 100834697 |