PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g61631.1.p
Common NameBRADI_2g61631
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 584aa    MW: 68409 Da    PI: 8.8885
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g61631.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.54.5e-1839121282
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkle 82 
                        Yn+YAk+ GF+vr + +++ + + e ++r+f+Cskeg+r e+    +++ r++ra tr+gCka+l++++e  +g w v++++
  Bradi2g61631.1.p  39 HYNSYAKSKGFNVRLDDKEYISGTMELKRRRFCCSKEGYRLEKYFVaKDQIREPRALTRCGCKAMLEIQREPgTGLWFVKNFV 121
                       6*******************99******************9987655789999*******************9******9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-1539121IPR004330FAR1 DNA binding domain
PfamPF105516.9E-36241334IPR018289MULE transposase domain
PROSITE profilePS509668.976499538IPR007527Zinc finger, SWIM-type
SMARTSM005750.0082513540IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MSGLTVSEMD GYNASMEEME EYHMMVSQMF GSVEEGYEHY NSYAKSKGFN VRLDDKEYIS  60
GTMELKRRRF CCSKEGYRLE KYFVAKDQIR EPRALTRCGC KAMLEIQREP GTGLWFVKNF  120
VDSPFLRSHR RLNNAQKADA VEYGLGGLRT CQIMEVMEKH HGGYDQVGFV SRDLYNFFAK  180
YKKKRILGRD AEFVLNHMRA QVERDAEFFF KYSTDDEGHL RNIFWADSQS QIDYEAFGDL  240
VVFDSTYRVN RYNLPFVPFI GVDHHRSTIV FCVGIVSDET VSSYEWLLQS FLEAMSHKNP  300
RSVITDGDAA MRKAIKKVMP RTNHRLCSWH IEQNMIRHLR NPMLRDFRKL IYQQATWMSR  360
MYKLRKRWSA AYTNGRYFLG MQSNQHSESL NSRLHNHLDR KMSLVDLVEH SEHFMSRIRR  420
NEAELDAKAA NSVLFTRIDT NPLEKNDAHI YTPKMFRKVR YCIRRSSAWE IEEHTERDGL  480
VTFRAALKER AEGGSRHVFF VECSFHGSSM NGIFCGCRKL ECEGVPCSHI FSVLSFLGVE  540
TIPPCCVRIR WTMQAKAAFV SETNANTHVW SEEMGRYRQM RNKA
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g61631.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167965.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K2DH860.0A0A2K2DH86_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI2G21270.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-82FAR1-related sequence 5