PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g61120.2.p

Common Name

BRADI_2g61120, LOC100823373

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

SRS

Protein Properties

Length: 345aa MW: 34820.1 Da PI: 8.08

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g61120.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	220.3	4.1e-68	115	278	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrelkskkqsalsstkl 91 t++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpa++rrer++q+ + +aasa a+a+sk++r ++q+++s+t++ Bradi2g61120.2.p 115 ATTTCQDCGNQAKKDCGHNRCRTCCKSRGFDCSTHVKSTWVPASRRRERHHQHPPLLGASAASAsspsaAAATSKKPRL--LSSQATTSHTST 205 5789********************************************888776655444444456445566666665..58899999999 PP DUF702 92 ssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s+a+++++++tss lP++v+++avf+cvrv+s+ddge+e+aYq++v+i+GhvfkG+LydqG+++ Bradi2g61120.2.p 206 SNATTPRSFDTSSshqdasfreqLPRQVRAPAVFKCVRVTSIDDGEDEYAYQATVTINGHVFKGFLYDQGVDD 278 *********999******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.5E-64	116	277	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.2E-26	118	160	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.2E-29	229	276	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MAADVGMVVV APAASFHHTH HHHHHHEAAA AAAAAAGGGD SIFPLLSAGV LDPDAAKSAA 60 ASGIQFWSSS QAPPPPQSPS GGGNPNPSLG ASFYLKTKPL PMLDTGGGSS GGSGATTTCQ 120 DCGNQAKKDC GHNRCRTCCK SRGFDCSTHV KSTWVPASRR RERHHQHPPL LGASAASASS 180 PSAAAATSKK PRLLSSQATT SHTSTSNATT PRSFDTSSSH QDASFREQLP RQVRAPAVFK 240 CVRVTSIDDG EDEYAYQATV TINGHVFKGF LYDQGVDDGR ASNDGSSAAA AGVPNISELH 300 LGGASGSGGA ARGSASMVPS DLYGSGGGGG HHLLGGSGYG NTMN*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MAADVGMVVV APAASFHHTH HHHHHHEAAA AAAAAAGGGD SIFPLLSAGV LDPDAAKSAA  60
ASGIQFWSSS QAPPPPQSPS GGGNPNPSLG ASFYLKTKPL PMLDTGGGSS GGSGATTTCQ  120
DCGNQAKKDC GHNRCRTCCK SRGFDCSTHV KSTWVPASRR RERHHQHPPL LGASAASASS  180
PSAAAATSKK PRLLSSQATT SHTSTSNATT PRSFDTSSSH QDASFREQLP RQVRAPAVFK  240
CVRVTSIDDG EDEYAYQATV TINGHVFKGF LYDQGVDDGR ASNDGSSAAA AGVPNISELH  300
LGGASGSGGA ARGSASMVPS DLYGSGGGGG HHLLGGSGYG NTMN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g61120.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010232833.1	0.0	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	2e-64	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	I1HVB4	0.0	I1HVB4_BRADI; Uncharacterized protein
STRING	BRADI2G61120.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	2e-53	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Bradi2g61120.2.p
Entrez Gene	100823373

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]