PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g61050.1.p
Common NameBRADI_2g61050, LOC100840404
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 243aa    MW: 26236.9 Da    PI: 8.7291
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g61050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.2e-1465117155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r+++hn+ Er RR+++N+ ++ Lr+llP a   + kKls   ++ ++ +YI +Lq
  Bradi2g61050.1.p  65 RKMSHNAYERDRRKQLNELYSSLRSLLPDA--DHTKKLSIPITVSRVLKYIPELQ 117
                       799**************************7..35666***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-1662133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.9164116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-1165117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-1265132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.82E-1165120No hitNo description
SMARTSM003533.3E-970122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGHKQLFVDD PFASSISSLE AEAIFSGAGG QWRAGGGLDD RDLSAMPAAA NTSSGGSGSP  60
GGGGRKMSHN AYERDRRKQL NELYSSLRSL LPDADHTKKL SIPITVSRVL KYIPELQKEV  120
DGLERKKEEL TRANCKPGVI AMKDQNVAPV VSATCLDDKD IMVQVSLLSG MAAAALPMST  180
CIKILENEGL RLVSSSTSAF GNRTFYNLHL QRNQRTMSKE CPAFCDELEK AIKKKAGLHM  240
HQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA motif 5'-CACGTGG-3' in the promoter of iron (Fe) deficiency-inducible genes as well as of genes involved in iron homeostasis, thus contributing to basal tolerance to iron deficiency, iron uptake from soil and iron transport, particularly during seed maturation and germination. Promotes the accumulation of mugineic acid family phytosiderophores (MAs). Required for ethylene-mediated signaling during iron deficiency responses. Improves growth and yield, especially in calcareous soil with low iron availability. Promotes iron concentration in shoots and grain. {ECO:0000250|UniProtKB:Q0JFZ0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g61050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565095.10.0protein IRON-RELATED TRANSCRIPTION FACTOR 2
SwissprotA2WZ604e-98IRO2_ORYSI; Protein IRON-RELATED TRANSCRIPTION FACTOR 2
TrEMBLI1HVA71e-180I1HVA7_BRADI; Uncharacterized protein
STRINGBRADI2G61050.11e-180(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.15e-32bHLH family protein