PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g60750.1.p
Common NameBRADI_2g60750
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 442aa    MW: 47714.5 Da    PI: 6.102
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g60750.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS411.39e-126584361374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lLl+cA a ++g l +a+a+L+++  la+pdgd+mqR+aa f+eALa+r +r +++l++al   + s+ + +e++aa++ f +++P+l++
  Bradi2g60750.1.p  58 LIHLLLNCAAAAAAGRLDAANAALEHIAALAAPDGDAMQRVAAAFAEALARRALRAWPGLCRALLLPRPSSPTPAESAAARRHFLDLCPFLRL 150
                       689*************************************************************777777789999***************** PP

              GRAS  94 shltaNqaIleavegeervHiiDfdi..sqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                       +  +aNqaIlea+ege+ vH++D++      +QW+ Ll+ La+Rpegpp++R+T+v++    +k+ l++t+  L+k Ae+l+vpf+fn++++ 
  Bradi2g60750.1.p 151 AGAAANQAILEAMEGEKIVHVVDLGGcgADATQWLELLRLLAARPEGPPHFRLTAVHE----HKDLLSQTAMVLTKEAERLDVPFQFNPVITP 239
                       ************************96335789**************************....9**************************9999 PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrll........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                       rle+l++e+Lrvk+gEala++++lqlh ll        d s s + e++++L ++++lsPkv+vvveqea+hn++ + erf+eal+yy+alfd
  Bradi2g60750.1.p 240 RLESLDVESLRVKTGEALAISCSLQLHCLLatdedaspD-SSSAAAEKESFLGALWGLSPKVMVVVEQEASHNTAGLTERFVEALNYYAALFD 331
                       ******************************777766642.333333689******************************************** PP

              GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                       +le++++r+s er+ vEr llg+ei+++vac ga+rrerhe++e+W +r+e+aGF  vpls++a  qa++  +  + +g++v ee+g+++l+W
  Bradi2g60750.1.p 332 CLEVGASRASVERARVERWLLGEEIKDIVACDGAARRERHERAERWAARMEAAGFAGVPLSYYALLQARRAAQGLGCEGFKVREEKGTFFLCW 424
                       ********************************************************************************************* PP

              GRAS 363 kdrpLvsvSaWr 374
                       +dr+L+svSaWr
  Bradi2g60750.1.p 425 QDRALFSVSAWR 436
                       ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.2632416IPR005202Transcription factor GRAS
PfamPF035143.1E-12358436IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MIQQQDTEGS SSSVTSSPLQ NFSAMPLHPG TAAAHTPAAA APPWMLRELR SDERGLCLIH  60
LLLNCAAAAA AGRLDAANAA LEHIAALAAP DGDAMQRVAA AFAEALARRA LRAWPGLCRA  120
LLLPRPSSPT PAESAAARRH FLDLCPFLRL AGAAANQAIL EAMEGEKIVH VVDLGGCGAD  180
ATQWLELLRL LAARPEGPPH FRLTAVHEHK DLLSQTAMVL TKEAERLDVP FQFNPVITPR  240
LESLDVESLR VKTGEALAIS CSLQLHCLLA TDEDASPDSS SAAAEKESFL GALWGLSPKV  300
MVVVEQEASH NTAGLTERFV EALNYYAALF DCLEVGASRA SVERARVERW LLGEEIKDIV  360
ACDGAARRER HERAERWAAR MEAAGFAGVP LSYYALLQAR RAAQGLGCEG FKVREEKGTF  420
FLCWQDRALF SVSAWRGRRF D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-61414381380Protein SCARECROW
5b3h_D7e-61414381380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g60750.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565067.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-157SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A0Q3GM540.0A0A0Q3GM54_BRADI; Uncharacterized protein
STRINGBRADI2G60750.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Representative plantOGRP25641433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-38scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]