PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g59119.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 216aa    MW: 23620.3 Da    PI: 10.6519
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g59119.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.32.6e-2567116251
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                       rie+ + rqv fskRr g++KKA+EL  LCdaeva+++fs+ gklyeyss
  Bradi2g59119.1.p  67 RIEDRTSRQVRFSKRRSGLFKKAFELALLCDAEVALLVFSPAGKLYEYSS 116
                       8***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.95958118IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-3358117IPR002100Transcription factor, MADS-box
CDDcd002657.53E-3759133No hitNo description
PRINTSPR004043.9E-276080IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-2860134IPR002100Transcription factor, MADS-box
PfamPF003199.4E-2567114IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-278095IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-2795116IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSSRPSPRTG PSPPPLPSVL PSPALPGLPR KRGTERDRER SGRRCVAART EEARSVMVRR  60
GRVELRRIED RTSRQVRFSK RRSGLFKKAF ELALLCDAEV ALLVFSPAGK LYEYSSSLSI  120
EGTYDRYQQF AGAVRNTYQG GASTSNDEDP SNLQSRLREI TAWSVHNNAD NADASNLEKL  180
EKLLTDAKRA LAKQNSNRSA TGENSNGPTG EGGNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A3e-1660117259Myocyte-specific enhancer factor 2A
3kov_B3e-1660117259Myocyte-specific enhancer factor 2A
3kov_I3e-1660117259Myocyte-specific enhancer factor 2A
3kov_J3e-1660117259Myocyte-specific enhancer factor 2A
3p57_A3e-1660117259Myocyte-specific enhancer factor 2A
3p57_B3e-1660117259Myocyte-specific enhancer factor 2A
3p57_C3e-1660117259Myocyte-specific enhancer factor 2A
3p57_D3e-1660117259Myocyte-specific enhancer factor 2A
3p57_I3e-1660117259Myocyte-specific enhancer factor 2A
3p57_J3e-1660117259Myocyte-specific enhancer factor 2A
5f28_A3e-1660117360MEF2C
5f28_B3e-1660117360MEF2C
5f28_C3e-1660117360MEF2C
5f28_D3e-1660117360MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g59119.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693330.0KF469333.1 Brachypodium distachyon MADS-box transcription factor 39 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288309.11e-113agamous-like MADS-box protein AGL14-like
SwissprotQ9XJ618e-70MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBLA0A2K2DGU41e-153A0A2K2DGU4_BRADI; Uncharacterized protein
STRINGBRADI2G59120.21e-112(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.13e-32AGAMOUS-like 14
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]